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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9141</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9142</small>
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@ -385,19 +385,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 S I R R I R</span></span>
<span><span class="co">#&gt; 2 R R S S I I</span></span>
<span><span class="co">#&gt; 3 I R R S R I</span></span>
<span><span class="co">#&gt; 4 I S I R R S</span></span>
<span><span class="co">#&gt; 5 R I R S R S</span></span>
<span><span class="co">#&gt; 6 R S I S R S</span></span>
<span><span class="co">#&gt; 1 R I S R S R</span></span>
<span><span class="co">#&gt; 2 R R R S R S</span></span>
<span><span class="co">#&gt; 3 I R I R S I</span></span>
<span><span class="co">#&gt; 4 S R I I R R</span></span>
<span><span class="co">#&gt; 5 I R I I R S</span></span>
<span><span class="co">#&gt; 6 R I S I I R</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 R</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 3 I</span></span>
<span><span class="co">#&gt; 4 I</span></span>
<span><span class="co">#&gt; 3 R</span></span>
<span><span class="co">#&gt; 4 R</span></span>
<span><span class="co">#&gt; 5 R</span></span>
<span><span class="co">#&gt; 6 S</span></span></code></pre></div>
<span><span class="co">#&gt; 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -438,40 +438,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3210</td>
<td align="right">64.20%</td>
<td align="right">3210</td>
<td align="right">64.20%</td>
<td align="right">3221</td>
<td align="right">64.42%</td>
<td align="right">3221</td>
<td align="right">64.42%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">990</td>
<td align="right">19.80%</td>
<td align="right">4200</td>
<td align="right">84.00%</td>
<td align="right">969</td>
<td align="right">19.38%</td>
<td align="right">4190</td>
<td align="right">83.80%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">450</td>
<td align="right">9.00%</td>
<td align="right">4650</td>
<td align="right">93.00%</td>
<td align="right">466</td>
<td align="right">9.32%</td>
<td align="right">4656</td>
<td align="right">93.12%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">246</td>
<td align="right">4.92%</td>
<td align="right">4896</td>
<td align="right">97.92%</td>
<td align="right">261</td>
<td align="right">5.22%</td>
<td align="right">4917</td>
<td align="right">98.34%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">104</td>
<td align="right">2.08%</td>
<td align="right">83</td>
<td align="right">1.66%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>