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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9141</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9142</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 64 8 64 128 4 0.25 8 0.002 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.01 128 0.0625 32 128 0.025 0.025 0.005 0.025 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 32 1 64 64 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 16 2 64 0.5 0.01 8 2 16 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 0.002 0.001 16 0.0625 1 0.001 0.001 0.0625 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.001 64 32 64 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 29 23 6 49 23 25 45 18 36 10 40 40 26 9 23 48 39 36 27 12 48 30 29 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 50 43 50 14 13 12 7 15 49 10 6 48 40 38 45 43 50 36 45 36 29 27 37 34</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I I R I R R R I R S I R R I S I I I S R S I I I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I S I R R R S I S S R R I S I R S I R I I R R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 32 0.125 1 >=64 2 0.001 0.002 >=64 0.5 0.005 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.125 4 4 4 16 32 16 0.5 0.001 0.002 8 0.002</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.001 >=64 4 0.01 4 16 0.0625 <=0.001 >=64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.001 0.005 0.002 0.01 <=0.001 0.0625 2 0.0625 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 1 0.025 8 0.0625 >=64 0.005 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 32 1 32 2 2 4 0.5 4 4 0.25 32 0.5 0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 32 0.5 1 32 1 8 8 16 0.25 0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.5 0.5 4 >=32 4 1 2 4 4 2 0.5 1 2 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 >=32 >=32 0.5 8 0.5 2 0.5 4 >=32</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 <=0.025 2 0.25 8 8 >=16 2 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 0.125 2 0.5 8 0.5 <=0.025 0.125 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 2 8 1 8 0.0625 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.0625 0.0625 0.125 0.25 2 0.0625 0.0625 0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 0.125 0.125 4 0.0625 4 0.125 0.25 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 0.0625 0.5 0.125 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 35 44 14 44 42 36 19 46 26 44 40 40 18 12 22 48 20 8 25 42 37 21 21 50 50</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 40 12 48 48 41 39 44 22 46 45 19 9 37 49 50 18 9 42 14 16 50 39 14 45 44</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 11 12 12 11 14 12 17 17 11 16 13 12 11 11 16 16 11 11 16 16 15 17 12 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 13 17 14 17 12 11 11 14 17 15 15 14 15 13 13 15 11 11 17 12 12 14 13 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 24 16 21 17 15 20 23 15 20 24 16 21 21 18 19 26 17 22 22 19 17 24 18 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 23 24 18 15 27 25 17 24 18 17 15 16 21 27 16 24 20 17 23 25 22 19 23 24</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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