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(v1.2.0.9035) as.mo() speed improvement

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dr. M.S. (Matthijs) Berends
2020-07-22 10:24:23 +02:00
parent 6ab468362d
commit 09fba38ea6
37 changed files with 174 additions and 441 deletions
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6
tests/testthat/test-data.R
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@ -38,6 +38,7 @@ test_that("data sets are valid", {
expect_true(all(rsi_translation$mo %in% microorganisms$mo))
expect_false(any(is.na(microorganisms.codes$code)))
expect_false(any(is.na(microorganisms.codes$mo)))
expect_false(any(microorganisms.translation$mo_old %in% microorganisms$mo))
# antibiotic names must always be coercible to their original AB code
expect_identical(antibiotics$ab, as.ab(antibiotics$name))
@ -62,10 +63,7 @@ test_that("creation of data sets is valid", {
olddf <- create_MO.old_lookup()
expect_true(all(c("fullname", "fullname_new", "ref", "prevalence",
"fullname_lower", "g_species") %in% colnames(olddf)))
old <- make_trans_tbl()
expect_gt(length(old), 0)
})
test_that("CoL version info works", {