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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -375,19 +375,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 R R S R I I</span></span>
<span><span class="co"># 2 R S S S I S</span></span>
<span><span class="co"># 3 R S R I S S</span></span>
<span><span class="co"># 4 R S S I I R</span></span>
<span><span class="co"># 5 S R R I I I</span></span>
<span><span class="co"># 6 S I I R R S</span></span>
<span><span class="co"># 1 R R R I I R</span></span>
<span><span class="co"># 2 I R R S I S</span></span>
<span><span class="co"># 3 S I I R I S</span></span>
<span><span class="co"># 4 I S R I I R</span></span>
<span><span class="co"># 5 I R R R R S</span></span>
<span><span class="co"># 6 R S R R S I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<span><span class="co"># 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3254</td>
<td align="right">65.08%</td>
<td align="right">3254</td>
<td align="right">65.08%</td>
<td align="right">3228</td>
<td align="right">64.56%</td>
<td align="right">3228</td>
<td align="right">64.56%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">960</td>
<td align="right">19.20%</td>
<td align="right">4214</td>
<td align="right">84.28%</td>
<td align="right">1000</td>
<td align="right">20.00%</td>
<td align="right">4228</td>
<td align="right">84.56%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">443</td>
<td align="right">8.86%</td>
<td align="right">4657</td>
<td align="right">93.14%</td>
<td align="right">458</td>
<td align="right">9.16%</td>
<td align="right">4686</td>
<td align="right">93.72%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">240</td>
<td align="right">4.80%</td>
<td align="right">4897</td>
<td align="right">97.94%</td>
<td align="right">216</td>
<td align="right">4.32%</td>
<td align="right">4902</td>
<td align="right">98.04%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">103</td>
<td align="right">2.06%</td>
<td align="right">98</td>
<td align="right">1.96%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>