P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-05-14 03:50:49 +02:00
Code Releases Activity

(v3.0.1.9057) website fix

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2026-05-02 14:56:26 +02:00
parent 64753e9a16
commit 0af3f84655
18 changed files with 81 additions and 102 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
_pkgdown.yml
View File

@@ -156,17 +156,17 @@ reference:
- "`atc_online_property`"
- "`add_custom_antimicrobials`"
- title: "Preparing data: antimicrobial results"
- title: "Interpreting data: antimicrobial results"
desc: >
With `as.mic()` and `as.disk()` you can transform your raw input to valid MIC or disk diffusion values.
Use `as.sir()` for cleaning raw data to let it only contain "R", "I" and "S", or to interpret MIC or disk diffusion values as SIR based on the lastest EUCAST and CLSI guidelines.
Afterwards, you can extend antibiotic interpretations by applying [EUCAST rules](https://www.eucast.org/expert_rules_and_intrinsic_resistance/) with `eucast_rules()`.
Afterwards, you can extend antibiotic interpretations by applying interpretive rules, for example [from EUCAST](https://www.eucast.org/expert_rules_and_intrinsic_resistance/) with `interpretive_rules()`.
contents:
- "`as.sir`"
- "`as.mic`"
- "`as.disk`"
- "`eucast_rules`"
- "`custom_eucast_rules`"
- "`interpretive_rules`"
- "`custom_interpretive_rules`"
- title: "Analysing data"
desc: >
@@ -265,7 +265,7 @@ reference:
- title: "Other: statistical tests"
desc: >
Some statistical tests or methods are not part of base R and were added to this package for convenience.
Some statistical tests or methods usable for AMR analyses are not part of base R and were added to this package for convenience.
contents:
- "`g.test`"
- "`kurtosis`"