From 0b0a4b6a51b314192d24f8f4e097e49a7047a34e Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Mon, 20 May 2024 19:35:19 +0000 Subject: [PATCH] cli-147-2196 --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/AMR.html | 2 +- articles/EUCAST.html | 2 +- articles/MDR.html | 2 +- articles/PCA.html | 2 +- articles/WHONET.html | 2 +- .../figure-html/unnamed-chunk-7-1.png | Bin 62857 -> 62375 bytes articles/datasets.html | 2 +- articles/index.html | 2 +- articles/other_pkg.html | 2 +- articles/resistance_predict.html | 2 +- articles/welcome_to_AMR.html | 2 +- authors.html | 2 +- index.html | 2 +- news/index.html | 17 +- pkgdown.yml | 2 +- reference/AMR-options.html | 2 +- reference/AMR.html | 2 +- reference/Rplot005.png | Bin 13381 -> 9042 bytes reference/Rplot006.png | Bin 13059 -> 9792 bytes reference/Rplot007.png | Bin 8352 -> 9232 bytes reference/Rplot008.png | Bin 9042 -> 20259 bytes reference/Rplot009.png | Bin 9792 -> 8863 bytes reference/Rplot010.png | Bin 9232 -> 15682 bytes reference/Rplot011.png | Bin 20259 -> 0 bytes reference/Rplot012.png | Bin 18185 -> 0 bytes reference/Rplot013.png | Bin 8863 -> 0 bytes reference/WHOCC.html | 2 +- reference/WHONET.html | 2 +- reference/ab_from_text.html | 2 +- reference/ab_property.html | 2 +- reference/add_custom_antimicrobials.html | 4 +- reference/add_custom_microorganisms.html | 2 +- reference/age.html | 2 +- reference/age_groups-1.png | Bin 44344 -> 43166 bytes reference/age_groups.html | 2 +- reference/antibiogram.html | 2 +- reference/antibiotic_class_selectors.html | 2 +- reference/antibiotics.html | 2 +- reference/as.ab.html | 2 +- reference/as.av.html | 2 +- reference/as.disk.html | 17 +- reference/as.mic-2.png | Bin 34827 -> 0 bytes reference/as.mic-3.png | Bin 75979 -> 0 bytes reference/as.mic-4.png | Bin 74640 -> 0 bytes reference/as.mic.html | 18 +-- reference/as.mo.html | 2 +- reference/as.sir.html | 149 +++++++----------- reference/atc_online.html | 2 +- reference/av_from_text.html | 2 +- reference/av_property.html | 2 +- reference/availability.html | 2 +- reference/bug_drug_combinations.html | 2 +- reference/clinical_breakpoints.html | 2 +- reference/count.html | 30 ++-- reference/custom_eucast_rules.html | 2 +- reference/dosage.html | 2 +- reference/eucast_rules.html | 2 +- reference/example_isolates.html | 2 +- reference/example_isolates_unclean.html | 2 +- reference/first_isolate.html | 2 +- reference/g.test.html | 2 +- reference/get_episode.html | 2 +- reference/ggplot_pca.html | 2 +- reference/ggplot_sir-1.png | Bin 30513 -> 29639 bytes reference/ggplot_sir-10.png | Bin 47008 -> 46444 bytes reference/ggplot_sir-2.png | Bin 48695 -> 47092 bytes reference/ggplot_sir-3.png | Bin 47734 -> 46254 bytes reference/ggplot_sir-4.png | Bin 37412 -> 36825 bytes reference/ggplot_sir-5.png | Bin 50910 -> 49462 bytes reference/ggplot_sir-6.png | Bin 35802 -> 34428 bytes reference/ggplot_sir-8.png | Bin 37191 -> 35782 bytes reference/ggplot_sir-9.png | Bin 47734 -> 46254 bytes reference/ggplot_sir.html | 6 +- reference/guess_ab_col.html | 2 +- reference/index.html | 2 +- reference/intrinsic_resistant.html | 2 +- reference/italicise_taxonomy.html | 2 +- reference/join.html | 2 +- reference/key_antimicrobials.html | 2 +- reference/kurtosis.html | 2 +- reference/like.html | 2 +- reference/mdro.html | 2 +- reference/mean_amr_distance.html | 2 +- reference/microorganisms.codes.html | 2 +- reference/microorganisms.groups.html | 2 +- reference/microorganisms.html | 2 +- reference/mo_matching_score.html | 2 +- reference/mo_property.html | 2 +- reference/mo_source.html | 2 +- reference/pca.html | 2 +- reference/plot-10.png | Bin 27064 -> 0 bytes reference/plot-11.png | Bin 64884 -> 0 bytes reference/plot-12.png | Bin 56797 -> 0 bytes reference/plot-13.png | Bin 27111 -> 0 bytes reference/plot-4.png | Bin 40277 -> 25157 bytes reference/plot-5.png | Bin 40137 -> 26567 bytes reference/plot-6.png | Bin 38447 -> 29775 bytes reference/plot-7.png | Bin 25157 -> 27064 bytes reference/plot-8.png | Bin 26567 -> 64884 bytes reference/plot-9.png | Bin 29775 -> 27111 bytes reference/plot.html | 22 +-- reference/proportion.html | 38 ++--- reference/random.html | 2 +- reference/resistance_predict.html | 2 +- reference/skewness.html | 2 +- reference/translate.html | 2 +- search.json | 2 +- 109 files changed, 194 insertions(+), 241 deletions(-) delete mode 100644 reference/Rplot011.png delete mode 100644 reference/Rplot012.png delete mode 100644 reference/Rplot013.png delete mode 100644 reference/as.mic-2.png delete mode 100644 reference/as.mic-3.png delete mode 100644 reference/as.mic-4.png delete mode 100644 reference/plot-10.png delete mode 100644 reference/plot-11.png delete mode 100644 reference/plot-12.png delete mode 100644 reference/plot-13.png diff --git a/404.html b/404.html index 08611ff0..8aa9011f 100644 --- a/404.html +++ b/404.html @@ -37,7 +37,7 @@ AMR (for R) - 2.1.1.9031 + 2.1.1.9032