From 0b8e89c845976c14896481895c3200e664834f3a Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Sun, 3 Mar 2024 22:05:59 +0000 Subject: [PATCH] Built site for AMR: 2.1.1.9013@f2d245b --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/AMR.html | 10 +-- .../figure-html/unnamed-chunk-10-1.png | Bin 43432 -> 43429 bytes articles/EUCAST.html | 2 +- articles/MDR.html | 60 ++++++------- articles/PCA.html | 2 +- .../figure-html/unnamed-chunk-6-1.png | Bin 94862 -> 94603 bytes .../figure-html/unnamed-chunk-7-1.png | Bin 95027 -> 94763 bytes articles/WHONET.html | 2 +- articles/datasets.html | 4 +- articles/index.html | 2 +- articles/other_pkg.html | 2 +- articles/resistance_predict.html | 2 +- articles/welcome_to_AMR.html | 2 +- authors.html | 2 +- extra.css | 30 +++++-- index.html | 4 +- news/index.html | 18 ++-- pkgdown.yml | 4 +- reference/AMR-options.html | 2 +- reference/AMR.html | 2 +- reference/Rplot012.png | Bin 20305 -> 20223 bytes reference/WHOCC.html | 2 +- reference/WHONET.html | 2 +- reference/ab_from_text.html | 2 +- reference/ab_property.html | 2 +- reference/add_custom_antimicrobials.html | 2 +- reference/add_custom_microorganisms.html | 2 +- reference/age.html | 22 ++--- reference/age_groups-1.png | Bin 46301 -> 46225 bytes reference/age_groups.html | 2 +- reference/antibiogram-2.png | Bin 39648 -> 39665 bytes reference/antibiogram.html | 34 +++---- reference/antibiotic_class_selectors.html | 2 +- reference/antibiotics.html | 2 +- reference/as.ab.html | 2 +- reference/as.av.html | 2 +- reference/as.disk.html | 2 +- reference/as.mic-3.png | Bin 53414 -> 53179 bytes reference/as.mic-4.png | Bin 51883 -> 51869 bytes reference/as.mic.html | 54 +++++------ reference/as.mo.html | 26 +++--- reference/as.sir.html | 62 ++++++------- reference/atc_online.html | 2 +- reference/av_from_text.html | 2 +- reference/av_property.html | 2 +- reference/availability.html | 2 +- reference/bug_drug_combinations.html | 2 +- reference/clinical_breakpoints.html | 2 +- reference/count.html | 42 ++++----- reference/custom_eucast_rules.html | 2 +- reference/dosage.html | 2 +- reference/eucast_rules.html | 2 +- reference/example_isolates.html | 2 +- reference/example_isolates_unclean.html | 2 +- reference/first_isolate.html | 2 +- reference/g.test.html | 4 +- reference/get_episode.html | 2 +- reference/ggplot_pca-2.png | Bin 90569 -> 89435 bytes reference/ggplot_pca.html | 2 +- reference/ggplot_sir-1.png | Bin 31389 -> 31410 bytes reference/ggplot_sir-2.png | Bin 50151 -> 50068 bytes reference/ggplot_sir-3.png | Bin 49416 -> 49293 bytes reference/ggplot_sir-4.png | Bin 40196 -> 40116 bytes reference/ggplot_sir-5.png | Bin 52078 -> 52128 bytes reference/ggplot_sir-6.png | Bin 35035 -> 35026 bytes reference/ggplot_sir-7.png | Bin 21942 -> 21815 bytes reference/ggplot_sir-8.png | Bin 37231 -> 37238 bytes reference/ggplot_sir-9.png | Bin 49416 -> 49293 bytes reference/ggplot_sir.html | 8 +- reference/guess_ab_col.html | 2 +- reference/index.html | 2 +- reference/intrinsic_resistant.html | 2 +- reference/italicise_taxonomy.html | 2 +- reference/join.html | 2 +- reference/key_antimicrobials.html | 2 +- reference/kurtosis.html | 2 +- reference/like.html | 2 +- reference/mdro.html | 42 ++++----- reference/mean_amr_distance.html | 2 +- reference/microorganisms.codes.html | 2 +- reference/microorganisms.groups.html | 2 +- reference/microorganisms.html | 2 +- reference/mo_matching_score.html | 2 +- reference/mo_property.html | 2 +- reference/mo_source.html | 84 +++++++++--------- reference/pca-2.png | Bin 89714 -> 88574 bytes reference/pca.html | 2 +- reference/plot-10.png | Bin 27660 -> 27595 bytes reference/plot-11.png | Bin 44163 -> 43915 bytes reference/plot-12.png | Bin 60308 -> 59916 bytes reference/plot-13.png | Bin 26146 -> 26205 bytes reference/plot-7.png | Bin 26057 -> 26123 bytes reference/plot-8.png | Bin 27081 -> 27030 bytes reference/plot-9.png | Bin 30546 -> 30537 bytes reference/plot.html | 2 +- reference/proportion.html | 42 ++++----- reference/random.html | 2 +- reference/resistance_predict-2.png | Bin 72663 -> 72824 bytes reference/resistance_predict-4.png | Bin 71896 -> 72209 bytes reference/resistance_predict.html | 2 +- reference/skewness.html | 2 +- reference/translate.html | 2 +- search.json | 2 +- 105 files changed, 341 insertions(+), 327 deletions(-) diff --git a/404.html b/404.html index dec01714..51d7e94e 100644 --- a/404.html +++ b/404.html @@ -37,7 +37,7 @@ AMR (for R) - 2.1.1.9012 + 2.1.1.9013