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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9053</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9054</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,42 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.001 4 1 0.125 8 0.002 1 0.0625 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 1 1 0.001 1 16 0.005 0.005 256 1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 0.0625 0.005 0.0625 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 64 0.25 2 1 2 0.125 4 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 0.025 <=0.002 0.25 64 0.0625 0.005 0.01 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 8 1 2 0.025 <=0.002 >=256 0.25 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 40 10 46 9 7 28 11 25 18 37 33 20 46 26 47 23 41 32 38 37 40 26 28 23 42</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 30 26 41 36 23 42 33 16 10 41 21 24 39 49 34 47 32 44 20 33 41 48 15 9 6</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I S R I I S S S I I R I S S S I S R I R I R S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S S I S I R I S I R I I R R I S S I S I I I I S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 4 0.01 64 0.01 8 0.001 0.025 4 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 32 32 0.025 2 0.025 64 0.0625 0.001 0.125 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 256 0.0625 256 256 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.25 0.025 16 0.005 0.125 0.5 0.0625 4 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 16 1 2 1 0.01 0.005 0.125 0.002 0.01 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 0.002 0.0625 >=32 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 4 >=16 2 1 4 4 0.25 0.25 0.25 4 1 8 0.5 0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 8 4 2 0.5 1 0.5 8 0.5 >=16 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 2 1 >=16 2 >=16 2 4 8 2 2 8 2 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=16 >=16 4 2 2 1 2 4 >=16 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.5 0.5 1 0.25 2 0.0625 0.125 1 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 0.125 0.125 2 0.125 0.025 0.25 >=4 0.0625 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 0.25 0.5 2 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.5 8 0.0625 1 0.5 <=0.025 0.125 <=0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 0.0625 0.25 0.0625 <=0.025 0.25 0.0625 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 <=0.025 2 0.25 8 1 0.125 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 36 27 44 26 43 42 49 42 46 41 41 12 32 35 20 21 8 43 8 45 50 47 45 50 37</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 50 45 44 44 18 37 24 21 47 26 16 15 43 43 15 40 35 30 15 21 41 8 29 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 16 14 14 14 14 11 17 11 14 13 16 15 15 17 17 13 17 11 14 14 12 12 12 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 11 14 15 11 16 16 14 17 13 14 11 16 12 14 12 17 12 15 11 14 11 14 13 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 27 27 17 18 15 17 25 15 22 23 22 26 24 15 15 16 24 16 19 20 26 25 21 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 16 18 21 25 26 19 21 26 17 18 15 24 15 18 20 17 24 17 19 26 18 17 16 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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