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improve as.mo()

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dr. M.S. (Matthijs) Berends
2023-05-24 15:55:53 +02:00
parent 3018fb87a9
commit 0bcf55d3b6
14 changed files with 76 additions and 22 deletions
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NEWS.md
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# AMR 2.0.0.9018
# AMR 2.0.0.9019
## Changed
* Added oxygen tolerance to over 25,000 bacteria in the `microorganisms` data set
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* Fixed some WHONET codes for microorganisms and consequently a couple of entries in `clinical_breakpoints`
* Fixed a bug for `as.mo()` that led to coercion of `NA` values when using custom microorganism codes
* Fixed usage of `icu_exclude` in `first_isolates()`
* Improved `as.mo()` algorithm for searching on only species names
# AMR 2.0.0