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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9145</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 1 0.125 >=256 32 0.005 0.25 0.25 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 32 64 0.125 32 4 0.0625 16 <=0.001 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 1 32 0.125 2 16 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 256 0.005 0.5 0.001 64 0.0625 0.005 0.005 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 0.0625 0.0625 0.002 32 2 0.0625 4 2 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.005 0.002 0.005 16 128 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 26 28 25 20 42 41 9 45 22 49 25 50 32 23 20 23 41 46 28 46 40 48 37 24</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 33 26 44 31 47 13 50 24 9 44 6 44 50 7 45 9 21 41 23 15 9 42 9 40</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S R R S S R R R I I S S I I I R I I R I R R I S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R I R S R I R S I S R R S R I S R I S I I I S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.001 32 128 128 8 4 0.25 0.005 0.01 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.002 0.01 0.25 0.002 0.025 1 4 0.25 16 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 128 8 0.5 0.0625 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.25 <=0.001 16 0.002 0.125 4 0.25 >=64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 <=0.001 0.005 0.125 0.025 <=0.001 2 0.5 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.002 0.25 0.0625 0.025 0.25 0.25 0.01 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 16 0.5 0.5 >=32 8 8 1 8 >=32 >=32 2 0.5 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 0.5 4 2 1 0.5 >=32 2 0.5 0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 16 0.5 8 4 <=0.25 2 1 2 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 0.5 4 16 8 8 <=0.25 4 32 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 0.5 16 0.5 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 1 0.25 2 <=0.125 2 0.25 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 4 <=0.125 0.25 4 0.25 0.5 2 <=0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 1 1 0.25 <=0.125 0.5 <=0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 >=8 0.5 0.0625 0.5 0.0625 0.25 0.5 4 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 1 1 >=8 >=8 >=8 2 0.25 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] >=8 >=8 0.5 0.25 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 46 50 12 9 33 34 12 50 35 19 12 41 34 13 48 10 42 16 20 10 49 29 17 42</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 47 43 49 8 36 33 21 38 30 39 13 41 22 47 21 19 12 47 12 36 46 48 47 27</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 13 11 16 16 14 14 12 13 17 17 16 13 13 13 15 15 17 13 17 15 11 12 16 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 11 17 17 11 17 12 17 16 17 16 13 13 12 16 14 13 11 11 12 13 11 13 12 11</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 23 25 25 19 23 18 25 16 17 15 22 24 15 22 17 15 26 25 25 21 25 22 16 27</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 20 17 19 16 20 24 17 23 19 25 27 19 22 19 23 18 23 24 21 24 26 21 27 18 17</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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