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(v2.1.1.9159) new approach as.ab()

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2025-02-26 19:23:54 +01:00
parent 122bca0f95
commit 0c3ea4b538
18 changed files with 130 additions and 284 deletions
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7
tests/testthat/test-ab.R
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@@ -27,20 +27,21 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
ab_reset_session()
expect_equal(
as.character(as.ab(c(
"J01FA01",
"J 01 FA 01",
"Erythromycin",
"eryt",
" eryt 123",
"ERYT",
"ERY",
"erytromicine",
"Erythrocin",
"Romycin"
))),
rep("ERY", 10)
rep("ERY", 9)
)
expect_identical(class(as.ab("amox")), c("ab", "character"))
@@ -49,7 +50,7 @@ expect_true(is.ab(as.ab("amox")))
expect_stdout(print(as.ab("amox")))
expect_stdout(print(data.frame(a = as.ab("amox"))))
# expect_warning(as.ab("J00AA00")) # ATC not yet available in data set
expect_warning(as.ab("J00AA00")) # ATC not yet available in data set
# expect_warning(as.ab("UNKNOWN"))
expect_stdout(print(as.ab("amox")))