P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-08 11:51:59 +02:00
Code Releases Activity

(v1.5.0.9030) as.ab() speed improvement

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-03-05 10:32:09 +01:00
parent 0e0e3c4ffa
commit 0d29bde693
29 changed files with 133 additions and 124 deletions
Download Patch File Download Diff File Expand all files Collapse all files

15
docs/news/index.html
View File

@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9029</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9030</span>
</span>
</div>
@ -236,9 +236,9 @@
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1509029" class="section level1">
<h1 class="page-header" data-toc-text="1.5.0.9029">
<a href="#amr-1509029" class="anchor"></a>AMR 1.5.0.9029<small> Unreleased </small>
<div id="amr-1509030" class="section level1">
<h1 class="page-header" data-toc-text="1.5.0.9030">
<a href="#amr-1509030" class="anchor"></a>AMR 1.5.0.9030<small> Unreleased </small>
</h1>
<div id="last-updated-5-march-2021" class="section level2">
<h2 class="hasAnchor">
@ -308,9 +308,9 @@
<h3 class="hasAnchor">
<a href="#changed" class="anchor"></a>Changed</h3>
<ul>
<li>Microbial taxonomy updated to 3 March 2021 (according to the <a href="https://lpsn.dsmz.de">LSPN</a>)
<li>Updated the bacterial taxonomy to 3 March 2021 (using <a href="https://lpsn.dsmz.de">LSPN</a>)
<ul>
<li>Added 3,372 new names and 1,523 existing names became synomyms</li>
<li>Added 3,372 new species and 1,523 existing species became synomyms</li>
<li>The URL of a bacterial species (<code><a href="../reference/mo_property.html">mo_url()</a></code>) will now lead to <a href="https://lpsn.dsmz.de" class="uri">https://lpsn.dsmz.de</a>
</li>
</ul>
@ -349,6 +349,7 @@
<li>Support for GISA (glycopeptide-intermediate <em>S. aureus</em>), so e.g. <code><a href="../reference/mo_property.html">mo_genus("GISA")</a></code> will return <code>"Staphylococcus"</code>
</li>
<li>Added translations of German and Spanish for more than 200 antimicrobial drugs</li>
<li>Speed improvement for <code><a href="../reference/as.ab.html">as.ab()</a></code> when the input is an official name or ATC code</li>
</ul>
</div>
<div id="other" class="section level3">
@ -1263,7 +1264,7 @@ This works for all drug combinations, such as ampicillin/sulbactam, ceftazidime/
<li>Based on the Compound ID, almost 5,000 official brand names have been added from many different countries</li>
<li>All references to antibiotics in our package now use EARS-Net codes, like <code>AMX</code> for amoxicillin</li>
<li>Functions <code>atc_certe</code>, <code>ab_umcg</code> and <code>atc_trivial_nl</code> have been removed</li>
<li>All <code>atc_*</code> functions are superceded by <code>ab_*</code> functions</li>
<li>All <code>atc_*</code> functions are superseded by <code>ab_*</code> functions</li>
<li>All output will be translated by using an included translation file which <a href="https://github.com/msberends/AMR/blob/master/data-raw/translations.tsv">can be viewed here</a>
</li>
</ul>