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rename pre-commit hook to pre-commit checks (no-check)

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dr. M.S. (Matthijs) Berends
2024-04-23 10:55:48 +02:00
parent 04df6dfcf5
commit 0d8a91db49
10 changed files with 21 additions and 19 deletions
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R/ab_selectors.R
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@ -611,7 +611,7 @@ ab_select_exec <- function(function_name,
} else if (isTRUE(function_name == "antimycobacterials")) {
abx <- AMR_env$AB_lookup$ab[which(AMR_env$AB_lookup$group == "Antimycobacterials")]
} else {
# their upper case equivalent are vectors with class 'ab', created in data-raw/_pre_commit_hook.R
# their upper case equivalent are vectors with class 'ab', created in data-raw/_pre_commit_checks.R
# carbapenems() gets its codes from AMR:::AB_CARBAPENEMS
abx <- get(paste0("AB_", toupper(function_name)), envir = asNamespace("AMR"))
# manually added codes from add_custom_antimicrobials() must also be supported