P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-11 20:21:55 +02:00
Code Releases Activity

rename pre-commit hook to pre-commit checks (no-check)

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2024-04-23 10:55:48 +02:00
parent 04df6dfcf5
commit 0d8a91db49
10 changed files with 21 additions and 19 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
R/guess_ab_col.R
View File

@ -335,7 +335,7 @@ get_ab_from_namespace <- function(x, cols_ab) {
x_new <- character()
for (val in x) {
if (paste0("AB_", val) %in% ls(envir = asNamespace("AMR"))) {
# antibiotic group names, as defined in data-raw/_pre_commit_hook.R, such as `AB_CARBAPENEMS`
# antibiotic group names, as defined in data-raw/_pre_commit_checks.R, such as `AB_CARBAPENEMS`
val <- eval(parse(text = paste0("AB_", val)), envir = asNamespace("AMR"))
} else if (val %in% AMR_env$AB_lookup$ab) {
# separate drugs, such as `AMX`