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rename pre-commit hook to pre-commit checks (no-check)

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dr. M.S. (Matthijs) Berends
2024-04-23 10:55:48 +02:00
parent 04df6dfcf5
commit 0d8a91db49
10 changed files with 21 additions and 19 deletions
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2
R/guess_ab_col.R
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@ -335,7 +335,7 @@ get_ab_from_namespace <- function(x, cols_ab) {
x_new <- character()
for (val in x) {
if (paste0("AB_", val) %in% ls(envir = asNamespace("AMR"))) {
# antibiotic group names, as defined in data-raw/_pre_commit_hook.R, such as `AB_CARBAPENEMS`
# antibiotic group names, as defined in data-raw/_pre_commit_checks.R, such as `AB_CARBAPENEMS`
val <- eval(parse(text = paste0("AB_", val)), envir = asNamespace("AMR"))
} else if (val %in% AMR_env$AB_lookup$ab) {
# separate drugs, such as `AMX`