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<a class="navbar-brand me-2" href="https://msberends.github.io/AMR/index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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</div>
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</div>
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<div class="section level2">
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<div class="section level2">
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<h2 class="pkg-version" data-toc-text="2.1.1.9034" id="amr-2119034">AMR 2.1.1.9034<a class="anchor" aria-label="anchor" href="#amr-2119034"></a></h2>
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<h2 class="pkg-version" data-toc-text="2.1.1.9035" id="amr-2119035">AMR 2.1.1.9035<a class="anchor" aria-label="anchor" href="#amr-2119035"></a></h2>
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<p><em>(this beta version will eventually become v3.0. We’re happy to reach a new major milestone soon, which will be all about the new One Health support!)</em></p>
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<p><em>(this beta version will eventually become v3.0. We’re happy to reach a new major milestone soon, which will be all about the new One Health support!)</em></p>
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<div class="section level5">
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<div class="section level5">
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<h5 id="a-new-milestone-one-health-support--human--veterinary--environmental-2-1-1-9034">A New Milestone: One Health Support (= Human + Veterinary + Environmental)<a class="anchor" aria-label="anchor" href="#a-new-milestone-one-health-support--human--veterinary--environmental-2-1-1-9034"></a></h5>
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<h5 id="a-new-milestone-one-health-support--human--veterinary--environmental-2-1-1-9035">A New Milestone: One Health Support (= Human + Veterinary + Environmental)<a class="anchor" aria-label="anchor" href="#a-new-milestone-one-health-support--human--veterinary--environmental-2-1-1-9035"></a></h5>
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<p>This package now supports not only tools for AMR data analysis in clinical settings, but also for veterinary and environmental microbiology. This was made possible through a collaboration with the <a href="https://www.upei.ca/avc" class="external-link">University of Prince Edward Island</a>, Canada. To celebrate this great improvement of the package, we also updated the package logo to reflect this change.</p>
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<p>This package now supports not only tools for AMR data analysis in clinical settings, but also for veterinary and environmental microbiology. This was made possible through a collaboration with the <a href="https://www.upei.ca/avc" class="external-link">University of Prince Edward Island</a>, Canada. To celebrate this great improvement of the package, we also updated the package logo to reflect this change.</p>
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<h3 id="breaking-2-1-1-9034">Breaking<a class="anchor" aria-label="anchor" href="#breaking-2-1-1-9034"></a></h3>
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<h3 id="breaking-2-1-1-9035">Breaking<a class="anchor" aria-label="anchor" href="#breaking-2-1-1-9035"></a></h3>
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<ul><li>Removed all functions and references that used the deprecated <code>rsi</code> class, which were all replaced with their <code>sir</code> equivalents over a year ago</li>
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<ul><li>Removed all functions and references that used the deprecated <code>rsi</code> class, which were all replaced with their <code>sir</code> equivalents over a year ago</li>
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<h3 id="new-2-1-1-9034">New<a class="anchor" aria-label="anchor" href="#new-2-1-1-9034"></a></h3>
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<h3 id="new-2-1-1-9035">New<a class="anchor" aria-label="anchor" href="#new-2-1-1-9035"></a></h3>
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<ul><li>One Health implementation
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<ul><li>One Health implementation
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<ul><li>Function <code><a href="../reference/as.sir.html">as.sir()</a></code> now has extensive support for animal breakpoints from CLSI. Use <code>breakpoint_type = "animal"</code> and set the <code>host</code> argument to a variable that contains animal species names.</li>
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<ul><li>Function <code><a href="../reference/as.sir.html">as.sir()</a></code> now has extensive support for animal breakpoints from CLSI. Use <code>breakpoint_type = "animal"</code> and set the <code>host</code> argument to a variable that contains animal species names.</li>
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<li>The <code>clinical_breakpoints</code> data set contains all these breakpoints, and can be downloaded on our <a href="https://msberends.github.io/AMR/articles/datasets.html">download page</a>.</li>
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<li>The <code>clinical_breakpoints</code> data set contains all these breakpoints, and can be downloaded on our <a href="https://msberends.github.io/AMR/articles/datasets.html">download page</a>.</li>
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<li>Function <code><a href="../reference/mo_property.html">mo_group_members()</a></code> to retrieve the member microorganisms of a microorganism group. For example, <code>mo_group_members("Strep group C")</code> returns a vector of all microorganisms that are in that group.</li>
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<li>Function <code><a href="../reference/mo_property.html">mo_group_members()</a></code> to retrieve the member microorganisms of a microorganism group. For example, <code>mo_group_members("Strep group C")</code> returns a vector of all microorganisms that are in that group.</li>
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<h3 id="changed-2-1-1-9034">Changed<a class="anchor" aria-label="anchor" href="#changed-2-1-1-9034"></a></h3>
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<h3 id="changed-2-1-1-9035">Changed<a class="anchor" aria-label="anchor" href="#changed-2-1-1-9035"></a></h3>
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<ul><li>For SIR interpretation, it is now possible to use column names for argument <code>ab</code> and <code>mo</code>: <code>as.sir(..., ab = "column1", mo = "column2")</code>. This greatly improves the flexibility for users.</li>
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<ul><li>For SIR interpretation, it is now possible to use column names for argument <code>ab</code> and <code>mo</code>: <code>as.sir(..., ab = "column1", mo = "column2")</code>. This greatly improves the flexibility for users.</li>
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<li>For MICs:
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<li>For MICs:
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<ul><li>Added as valid levels: 4096, 6 powers of 0.0625, and 5 powers of 192 (192, 384, 576, 768, 960)</li>
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<ul><li>Added as valid levels: 4096, 6 powers of 0.0625, and 5 powers of 192 (192, 384, 576, 768, 960)</li>
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<li>Improved overall algorithm of <code><a href="../reference/as.ab.html">as.ab()</a></code> for better performance and accuracy</li>
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<li>Improved overall algorithm of <code><a href="../reference/as.ab.html">as.ab()</a></code> for better performance and accuracy</li>
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<div class="section level3">
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<h3 id="other-2-1-1-9034">Other<a class="anchor" aria-label="anchor" href="#other-2-1-1-9034"></a></h3>
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<h3 id="other-2-1-1-9035">Other<a class="anchor" aria-label="anchor" href="#other-2-1-1-9035"></a></h3>
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<ul><li>Added Jordan Stull, Matthew Saab, and Javier Sanchez as contributors, to thank them for their valuable input</li>
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<ul><li>Added Jordan Stull, Matthew Saab, and Javier Sanchez as contributors, to thank them for their valuable input</li>
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resistance_predict: resistance_predict.html
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resistance_predict: resistance_predict.html
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welcome_to_AMR: welcome_to_AMR.html
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welcome_to_AMR: welcome_to_AMR.html
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WHONET: WHONET.html
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WHONET: WHONET.html
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last_built: 2024-05-30T14:04Z
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last_built: 2024-05-30T14:42Z
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urls:
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urls:
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reference: https://msberends.github.io/AMR/reference
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reference: https://msberends.github.io/AMR/reference
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article: https://msberends.github.io/AMR/articles
|
article: https://msberends.github.io/AMR/articles
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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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||||||
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|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -24,7 +24,7 @@ The AMR package is available in English, Chinese, Czech, Danish, Dutch, Finnish,
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
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||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -10,7 +10,7 @@
|
|||||||
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||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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||||||
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|||||||
@ -10,7 +10,7 @@
|
|||||||
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||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
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|||||||
@ -10,7 +10,7 @@
|
|||||||
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|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
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@ -10,7 +10,7 @@
|
|||||||
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|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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||||||
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@ -10,7 +10,7 @@
|
|||||||
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||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
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||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
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|||||||
@ -10,7 +10,7 @@
|
|||||||
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|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
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||||||
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||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
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|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
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||||||
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||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
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|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
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||||||
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||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -12,7 +12,7 @@ In short, if you have a column name that resembles an antimicrobial drug, it wil
|
|||||||
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|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
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||||||
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|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
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|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
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|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
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||||||
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||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
@ -244,8 +244,7 @@
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'ampicillin' (AMP) (AMP, ampicillin),</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'ampicillin' (AMP), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> [1] R</span>
|
<span class="r-out co"><span class="r-pr">#></span> [1] R</span>
|
||||||
@ -256,13 +255,17 @@
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'AMP', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'AMP' (ampicillin), EUCAST</span>
|
||||||
|
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'CIP', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'CIP' (ciprofloxacin), EUCAST</span>
|
||||||
|
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'GEN', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'GEN' (gentamicin), EUCAST</span>
|
||||||
|
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'TOB', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'TOB' (tobramycin), EUCAST</span>
|
||||||
|
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> microorganism AMP CIP GEN TOB</span>
|
<span class="r-out co"><span class="r-pr">#></span> microorganism AMP CIP GEN TOB</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> 1 Escherichia coli S <NA> S S</span>
|
<span class="r-out co"><span class="r-pr">#></span> 1 Escherichia coli S <NA> S S</span>
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
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|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
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||||||
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|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
@ -291,7 +291,7 @@
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMX', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMX' (amoxicillin), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for amoxicillin (AMX) in Streptococcus</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for amoxicillin (AMX) in Streptococcus</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> pneumoniae - assuming body site 'Meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> pneumoniae - assuming body site 'Meningitis'.</span>
|
||||||
@ -307,7 +307,7 @@
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: , EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: AMX, EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for amoxicillin (AMX) in Streptococcus</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for amoxicillin (AMX) in Streptococcus</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> pneumoniae - assuming body site 'Meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> pneumoniae - assuming body site 'Meningitis'.</span>
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -24,7 +24,7 @@ All breakpoints used for interpretation are available in our clinical_breakpoint
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
@ -576,21 +576,23 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: column 'AMP', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: column 'AMP' (ampicillin), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: column 'CIP', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: column 'CIP' (ciprofloxacin), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'GEN', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'GEN' (gentamicin), EUCAST</span>
|
||||||
|
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'TOB', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: column 'TOB' (tobramycin), EUCAST</span>
|
||||||
|
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
@ -605,19 +607,19 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 13 × 14</span></span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 13 × 14</span></span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> datetime index ab_user mo_user ab mo input</span>
|
<span class="r-out co"><span class="r-pr">#></span> datetime index ab_user mo_user ab mo input</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dttm></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><ab></span> <span style="color: #949494; font-style: italic;"><mo></span> <span style="color: #949494; font-style: italic;"><dbl></span></span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dttm></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><ab></span> <span style="color: #949494; font-style: italic;"><mo></span> <span style="color: #949494; font-style: italic;"><dbl></span></span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 2024-05-30 <span style="color: #949494;">14:05:20</span> 1 TOB Escherich… TOB B_[ORD]_ENTRBCTR 16 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 2024-05-30 <span style="color: #949494;">14:43:21</span> 1 TOB Escherich… TOB B_[ORD]_ENTRBCTR 16 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2024-05-30 <span style="color: #949494;">14:05:20</span> 1 GEN Escherich… GEN B_[ORD]_ENTRBCTR 18 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2024-05-30 <span style="color: #949494;">14:43:21</span> 1 GEN Escherich… GEN B_[ORD]_ENTRBCTR 18 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2024-05-30 <span style="color: #949494;">14:05:20</span> 1 CIP Escherich… CIP B_[ORD]_ENTRBCTR 0.256</span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2024-05-30 <span style="color: #949494;">14:43:21</span> 1 CIP Escherich… CIP B_[ORD]_ENTRBCTR 0.256</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2024-05-30 <span style="color: #949494;">14:05:20</span> 1 AMP Escherich… AMP B_[ORD]_ENTRBCTR 8 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2024-05-30 <span style="color: #949494;">14:43:21</span> 1 AMP Escherich… AMP B_[ORD]_ENTRBCTR 8 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 2024-05-30 <span style="color: #949494;">14:05:15</span> 1 AMX B_STRPT_P… AMX B_STRPT_PNMN 0.01 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 2024-05-30 <span style="color: #949494;">14:43:16</span> 1 AMX B_STRPT_P… AMX B_STRPT_PNMN 0.01 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 2024-05-30 <span style="color: #949494;">14:05:15</span> 2 AMX B_STRPT_P… AMX B_STRPT_PNMN 2 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 2024-05-30 <span style="color: #949494;">14:43:16</span> 2 AMX B_STRPT_P… AMX B_STRPT_PNMN 2 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 2024-05-30 <span style="color: #949494;">14:05:15</span> 3 AMX B_STRPT_P… AMX B_STRPT_PNMN 4 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 2024-05-30 <span style="color: #949494;">14:43:16</span> 3 AMX B_STRPT_P… AMX B_STRPT_PNMN 4 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 2024-05-30 <span style="color: #949494;">14:05:15</span> 4 AMX B_STRPT_P… AMX B_STRPT_PNMN 8 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 2024-05-30 <span style="color: #949494;">14:43:16</span> 4 AMX B_STRPT_P… AMX B_STRPT_PNMN 8 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 2024-05-30 <span style="color: #949494;">14:05:15</span> 1 AMX B_STRPT_P… AMX B_STRPT_PNMN 2 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 2024-05-30 <span style="color: #949494;">14:43:16</span> 1 AMX B_STRPT_P… AMX B_STRPT_PNMN 2 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 2024-05-30 <span style="color: #949494;">14:05:15</span> 1 TOB Escherich… TOB B_[ORD]_ENTRBCTR 16 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 2024-05-30 <span style="color: #949494;">14:43:16</span> 1 TOB Escherich… TOB B_[ORD]_ENTRBCTR 16 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">11</span> 2024-05-30 <span style="color: #949494;">14:05:15</span> 1 GEN Escherich… GEN B_[ORD]_ENTRBCTR 18 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">11</span> 2024-05-30 <span style="color: #949494;">14:43:16</span> 1 GEN Escherich… GEN B_[ORD]_ENTRBCTR 18 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">12</span> 2024-05-30 <span style="color: #949494;">14:05:15</span> 1 AMP Escherich… AMP B_[ORD]_ENTRBCTR 20 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">12</span> 2024-05-30 <span style="color: #949494;">14:43:16</span> 1 AMP Escherich… AMP B_[ORD]_ENTRBCTR 20 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">13</span> 2024-05-30 <span style="color: #949494;">14:05:14</span> 1 ampicillin Strep pneu AMP B_STRPT_PNMN 18 </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">13</span> 2024-05-30 <span style="color: #949494;">14:43:16</span> 1 ampicillin Strep pneu AMP B_STRPT_PNMN 18 </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 7 more variables: outcome <sir>, method <chr>, breakpoint_S_R <chr>,</span></span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 7 more variables: outcome <sir>, method <chr>, breakpoint_S_R <chr>,</span></span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># guideline <chr>, host <chr>, ref_table <chr>, uti <lgl></span></span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># guideline <chr>, host <chr>, ref_table <chr>, uti <lgl></span></span>
|
||||||
<span class="r-in"><span></span></span>
|
<span class="r-in"><span></span></span>
|
||||||
@ -632,7 +634,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' (ampicillin), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ampicillin (AMP) in Streptococcus</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ampicillin (AMP) in Streptococcus</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> pneumoniae - assuming body site 'Non-meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> pneumoniae - assuming body site 'Non-meningitis'.</span>
|
||||||
@ -649,8 +651,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'ampicillin' (AMP) (AMP, ampicillin),</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'ampicillin' (AMP), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> [1] R</span>
|
<span class="r-out co"><span class="r-pr">#></span> [1] R</span>
|
||||||
@ -689,14 +690,14 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' (ampicillin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' (ciprofloxacin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
||||||
@ -704,25 +705,25 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' (ampicillin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' (ciprofloxacin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN' based on column 'microorganism',</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN' (gentamicin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB' based on column 'microorganism',</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB' (tobramycin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
@ -731,14 +732,14 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' (ampicillin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' (ciprofloxacin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
||||||
@ -746,25 +747,25 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' (ampicillin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' (ciprofloxacin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN' based on column 'microorganism',</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN' (gentamicin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB' based on column 'microorganism',</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB' (tobramycin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
@ -773,25 +774,25 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' (ampicillin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' (ciprofloxacin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN' based on column 'microorganism',</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN' (gentamicin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB' based on column 'microorganism',</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB' (tobramycin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
@ -800,25 +801,25 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' (ampicillin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for ampicillin (AMP) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming body site 'Intravenous'. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' based on column 'microorganism', EUCAST</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' (ciprofloxacin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> - assuming body site 'Non-meningitis'.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN' based on column 'microorganism',</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN' (gentamicin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for gentamicin (GEN) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> set which isolates are from urine. See ?as.sir.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB' based on column 'microorganism',</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB' (tobramycin) based on column</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> 'microorganism', EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
<span class="r-msg co"><span class="r-pr">#></span> NOTE </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> • Breakpoints for UTI and non-UTI available for tobramycin (TOB) in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Escherichia coli - assuming an unspecified body site. Use argument uti to</span>
|
||||||
@ -827,7 +828,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: column , EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: column NIT, EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> ℹ Assuming value "urine" in column 'specimen' reflects a urinary tract</span>
|
<span class="r-msg co"><span class="r-pr">#></span> ℹ Assuming value "urine" in column 'specimen' reflects a urinary tract</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> infection.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> infection.</span>
|
||||||
@ -836,19 +837,19 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: column , EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: column NIT, EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
|
<span class="r-msg co"><span class="r-pr">#></span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
<span class="r-msg co"><span class="r-pr">#></span> all the details of the breakpoint interpretations. Note that some</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
<span class="r-msg co"><span class="r-pr">#></span> microorganisms might not have breakpoints for each antimicrobial drug in</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
<span class="r-msg co"><span class="r-pr">#></span> EUCAST 2023.</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'AMP' (ampicillin), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting MIC values: 'CIP' (ciprofloxacin), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'GEN' (gentamicin), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB', EUCAST 2023...</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Interpreting disk diffusion zones: 'TOB' (tobramycin), EUCAST 2023...</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
<span class="r-msg co"><span class="r-pr">#></span> OK </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> microorganism AMP CIP GEN TOB ERY</span>
|
<span class="r-out co"><span class="r-pr">#></span> microorganism AMP CIP GEN TOB ERY</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> 1 Escherichia coli S <NA> S S R</span>
|
<span class="r-out co"><span class="r-pr">#></span> 1 Escherichia coli S <NA> S S R</span>
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -16,7 +16,7 @@ Use as.sir() to transform MICs or disks measurements to SIR values."><meta prope
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -12,7 +12,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -12,7 +12,7 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -12,7 +12,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
|
|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -12,7 +12,7 @@ This is the fastest way to have your organisation (or analysis) specific codes p
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -12,7 +12,7 @@ Especially the scale_*_mic() functions are relevant wrappers to plot MIC values
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -12,7 +12,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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||||||
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -10,7 +10,7 @@
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||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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||||||
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||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -10,7 +10,7 @@
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|||||||
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||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
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||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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||||||
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@ -12,7 +12,7 @@ When negative ('left-skewed'): the left tail is longer; the mass of the distribu
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
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||||||
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|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
|||||||
@ -10,7 +10,7 @@
|
|||||||
|
|
||||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||||
|
|
||||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9034</small>
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9035</small>
|
||||||
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|
||||||
|
|
||||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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Reference in New Issue
Block a user