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(v2.1.1.9107) new pkg knowledge for AMR

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2024-11-21 12:02:58 +01:00
parent 31a0da0d3a
commit 0fda130a0b
10 changed files with 20380 additions and 138101 deletions
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68
data-raw/_generate_GPT_knowledge_input.sh
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@ -6,13 +6,17 @@ if [ "$(basename "$PWD")" != "AMR" ]; then
exit 1
fi
rm -rf data-raw/gpt_training_text_v*
# Define the output file, located in ./data-raw
version="$1"
output_file="data-raw/gpt_training_text_v${version}.txt"
# Clear the output file if it exists
echo "This files contains all context you must know about the AMR package for R." > "$output_file"
echo -e "\n\n\n\n" >> "$output_file"
echo "First and foremost, you are trained on version ${version}. Remember this whenever someone asks which AMR package version you’re at." >> "$output_file"
echo "--------------------------------" >> "$output_file"
echo "" >> "$output_file"
# Function to remove header block (delimited by # ======)
remove_header() {
@ -20,43 +24,51 @@ remove_header() {
}
# Process all .R files in the 'R' folder
for file in R/*.R; do
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
# for file in R/*.R; do
# echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE '$file':" >> "$output_file"
# echo -e "\n" >> "$output_file"
# remove_header "$file" >> "$output_file"
# echo -e "\n\n" >> "$output_file"
# done
# Process important metadata files (DESCRIPTION, NAMESPACE, index.md)
for file in NAMESPACE index.md; do
if [[ -f $file ]]; then
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE '$file':" >> "$output_file"
echo -e "\n" >> "$output_file"
cat "$file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
fi
done
# Process all .Rd files from the 'man' folder
for file in man/*.Rd; do
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE '$file':" >> "$output_file"
echo -e "\n" >> "$output_file"
remove_header "$file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
done
# Process all .Rmd files in the 'vignettes' folder
for file in vignettes/*.Rmd; do
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE '$file':" >> "$output_file"
echo -e "\n" >> "$output_file"
remove_header "$file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
done
# Process important metadata files (DESCRIPTION, NAMESPACE, index.md)
for file in DESCRIPTION NAMESPACE index.md; do
if [[ -f $file ]]; then
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
cat "$file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
fi
# Process all .Rmd files in the 'vignettes' folder
echo "THE PART HEREAFTER CONTAINS THE README OF OUR PYTHON PACKAGE" >> "$output_file"
echo -e "\n" >> "$output_file"
for file in PythonPackage/AMR/README.md; do
remove_header "$file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
done
# Process test files (if available) in the 'tests' folder
for file in tests/*.R; do
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
remove_header "$file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
done
# Process all .Rd files from the 'man' folder
for file in man/*.Rd; do
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
remove_header "$file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
done
# for file in tests/*.R; do
# echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE '$file':" >> "$output_file"
# echo -e "\n" >> "$output_file"
# remove_header "$file" >> "$output_file"
# echo -e "\n\n" >> "$output_file"
# done