unit tests

man/ab_property.Rd

@@ -109,38 +109,35 @@ All data sets in this \code{AMR} package (about microorganisms, antibiotics, R/S
 
 \examples{
 # all properties:
-ab_name("AMX") # "Amoxicillin"
-ab_atc("AMX") # "J01CA04" (ATC code from the WHO)
-ab_cid("AMX") # 33613 (Compound ID from PubChem)
-ab_synonyms("AMX") # a list with brand names of amoxicillin
-ab_tradenames("AMX") # same
-ab_group("AMX") # "Beta-lactams/penicillins"
-ab_atc_group1("AMX") # "Beta-lactam antibacterials, penicillins"
-ab_atc_group2("AMX") # "Penicillins with extended spectrum"
-ab_url("AMX") # link to the official WHO page
+ab_name("AMX")
+ab_atc("AMX")
+ab_cid("AMX")
+ab_synonyms("AMX")
+ab_tradenames("AMX")
+ab_group("AMX")
+ab_atc_group1("AMX")
+ab_atc_group2("AMX")
+ab_url("AMX")
 
 # smart lowercase tranformation
-ab_name(x = c("AMC", "PLB")) # "Amoxicillin/clavulanic acid" "Polymyxin B"
-ab_name(
-  x = c("AMC", "PLB"),
-  tolower = TRUE
-) # "amoxicillin/clavulanic acid" "polymyxin B"
+ab_name(x = c("AMC", "PLB"))
+ab_name(x = c("AMC", "PLB"), tolower = TRUE)
 
 # defined daily doses (DDD)
-ab_ddd("AMX", "oral") #  1.5
-ab_ddd_units("AMX", "oral") # "g"
-ab_ddd("AMX", "iv") #  3
-ab_ddd_units("AMX", "iv") # "g"
+ab_ddd("AMX", "oral")
+ab_ddd_units("AMX", "oral")
+ab_ddd("AMX", "iv")
+ab_ddd_units("AMX", "iv")
 
 ab_info("AMX") # all properties as a list
 
 # all ab_* functions use as.ab() internally, so you can go from 'any' to 'any':
-ab_atc("AMP") # ATC code of AMP (ampicillin)
-ab_group("J01CA01") # Drug group of ampicillins ATC code
-ab_loinc("ampicillin") # LOINC codes of ampicillin
-ab_name("21066-6") # "Ampicillin" (using LOINC)
-ab_name(6249) # "Ampicillin" (using CID)
-ab_name("J01CA01") # "Ampicillin" (using ATC)
+ab_atc("AMP")
+ab_group("J01CA01")
+ab_loinc("ampicillin")
+ab_name("21066-6")
+ab_name(6249)
+ab_name("J01CA01")
 
 # spelling from different languages and dyslexia are no problem
 ab_atc("ceftriaxon")

man/av_property.Rd

@@ -85,44 +85,33 @@ All data sets in this \code{AMR} package (about microorganisms, antibiotics, R/S
 
 \examples{
 # all properties:
-av_name("AMX") # "Amoxicillin"
-av_atc("AMX") # "J01CA04" (ATC code from the WHO)
-av_cid("AMX") # 33613 (Compound ID from PubChem)
-av_synonyms("AMX") # a list with brand names of amoxicillin
-av_tradenames("AMX") # same
-av_group("AMX") # "Beta-lactams/penicillins"
-av_atc_group1("AMX") # "Beta-lactam antibacterials, penicillins"
-av_atc_group2("AMX") # "Penicillins with extended spectrum"
-av_url("AMX") # link to the official WHO page
+av_name("ACI")
+av_atc("ACI")
+av_cid("ACI")
+av_synonyms("ACI")
+av_tradenames("ACI")
+av_group("ACI")
+av_url("ACI")
 
 # smart lowercase tranformation
-av_name(x = c("AMC", "PLB")) # "Amoxicillin/clavulanic acid" "Polymyxin B"
-av_name(
-  x = c("AMC", "PLB"),
-  tolower = TRUE
-) # "amoxicillin/clavulanic acid" "polymyxin B"
+av_name(x = c("ACI", "VALA"))
+av_name(x = c("ACI", "VALA"), tolower = TRUE)
 
 # defined daily doses (DDD)
-av_ddd("AMX", "oral") #  1.5
-av_ddd_units("AMX", "oral") # "g"
-av_ddd("AMX", "iv") #  3
-av_ddd_units("AMX", "iv") # "g"
+av_ddd("ACI", "oral")
+av_ddd_units("ACI", "oral")
+av_ddd("ACI", "iv")
+av_ddd_units("ACI", "iv")
 
-av_info("AMX") # all properties as a list
+av_info("ACI") # all properties as a list
 
 # all av_* functions use as.av() internally, so you can go from 'any' to 'any':
-av_atc("AMP") # ATC code of AMP (ampicillin)
-av_group("J01CA01") # Drug group of ampicillins ATC code
-av_loinc("ampicillin") # LOINC codes of ampicillin
-av_name("21066-6") # "Ampicillin" (using LOINC)
-av_name(6249) # "Ampicillin" (using CID)
-av_name("J01CA01") # "Ampicillin" (using ATC)
-
-# spelling from different languages and dyslexia are no problem
-av_atc("ceftriaxon")
-av_atc("cephtriaxone")
-av_atc("cephthriaxone")
-av_atc("seephthriaaksone")
+av_atc("ACI")
+av_group("J05AB01")
+av_loinc("abacavir")
+av_name("29113-8")
+av_name(135398513)
+av_name("J05AB01")
 }
 \seealso{
 \link{antivirals}