mirror of
https://github.com/msberends/AMR.git
synced 2025-07-27 12:27:56 +02:00
Built site for AMR@2.1.1.9279: 26447fe
This commit is contained in:
github-actions
@ -7,7 +7,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9277</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9279</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -23,7 +23,7 @@
|
||||
<li><a class="dropdown-item" href="../articles/datasets.html"><span class="fa fa-database"></span> Download Data Sets for Own Use</a></li>
|
||||
<li><a class="dropdown-item" href="../reference/AMR-options.html"><span class="fa fa-gear"></span> Set User- Or Team-specific Package Settings</a></li>
|
||||
<li><a class="dropdown-item" href="../articles/PCA.html"><span class="fa fa-compress"></span> Conduct Principal Component Analysis for AMR</a></li>
|
||||
<li><a class="dropdown-item" href="../articles/MDR.html"><span class="fa fa-skull-crossbones"></span> Determine Multi-Drug Resistance (MDR)</a></li>
|
||||
<li><a class="dropdown-item" href="../reference/mdro.html"><span class="fa fa-skull-crossbones"></span> Determine Multi-Drug Resistance (MDR)</a></li>
|
||||
<li><a class="dropdown-item" href="../articles/WHONET.html"><span class="fa fa-globe-americas"></span> Work with WHONET Data</a></li>
|
||||
<li><a class="dropdown-item" href="../articles/EUCAST.html"><span class="fa fa-exchange-alt"></span> Apply EUCAST Rules</a></li>
|
||||
<li><a class="dropdown-item" href="../reference/mo_property.html"><span class="fa fa-bug"></span> Get Taxonomy of a Microorganism</a></li>
|
||||
@ -100,43 +100,43 @@
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 8 1 4 0.01 0.002 64 <=0.001 0.01 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 1 >=256 >=256 2 0.025 0.01 64 4 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 8 0.005 >=256 8 <=0.001 8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] <=0.001 8 0.002 256 256 256 0.125 0.25 0.005 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 1 0.01 32 32 256 0.01 32 8 0.025 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.0625 0.5 0.0625 0.5 0.01 0.125 0.5 </span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 7 45 30 48 23 12 45 40 47 9 20 20 23 9 32 20 50 26 42 30 47 11 24 34 46</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 48 46 26 46 17 46 15 50 20 13 48 44 6 47 26 15 12 20 11 45 8 41 45 14 37</span>
|
||||
<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] I R I S S I S S I S S R I S I I R S R S R R S I I</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] I R S R I S S I S R S R I R S S S S I R S S S S R</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.0625 16 0.005 0.01 0.25 0.5 4 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 0.125 0.25 >=64 >=64 2 0.025 0.0625 0.025 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 2 0.125 0.01 8 <=0.001 0.0625 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.25 0.002 0.025 0.01 0.0625 0.25 0.01 0.0625 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] <=0.001 0.01 0.125 8 0.002 0.0625 0.002 >=256 >=256 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 >=256 1 0.125 64 64 0.25 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 1 8 1 0.5 4 4 2 4 8 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 8 <=0.25 16 2 2 2 16 4 0.5 8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 8 <=0.25 2 8 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 <=0.5 8 8 <=0.5 2 2 8 2 8 8 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] 1 <=0.5 >=16 1 4 2 1 <=0.5 >=16 4 4 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 1 0.25 >=8 2 1 <=0.125 0.25 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 2 1 4 0.5 <=0.125 2 2 <=0.125 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 >=8 2 0.5 2 >=8 >=8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.5 2 0.125 <=0.025 0.25 0.0625 2 16 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.5 16 0.5 1 8 <=0.025 2 <=0.025</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 8 1 0.0625 2 1 4 </span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 39 14 27 41 44 37 46 17 16 13 23 31 19 22 42 15 40 44 40 40 30 34 34 43 16</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 39 19 39 20 37 11 18 10 46 46 9 40 46 24 30 31 13 12 42 50 43 12 34 22 47</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 12 15 17 17 12 13 16 14 15 12 15 16 11 15 11 17 15 13 14 11 13 17 11 17 16</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 13 11 17 12 11 16 13 14 15 13 17 15 11 13 16 15 14 13 12 16 14 11 12 14 17</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 16 26 21 26 20 22 25 18 26 27 18 25 17 23 21 16 20 23 21 15 21 22 20 19 17</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 24 19 20 27 27 20 21 16 23 20 22 17 27 20 23 22 22 16 16 24 24 19 25 17 19</span>
|
||||
<span class="r-in"><span><span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
||||
Reference in New Issue
Block a user