P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-12-25 09:50:26 +01:00
Code Releases Activity

Built site for AMR@3.0.1.9007: a5c6aa9

Browse Source
This commit is contained in:
github-actions
2025-12-22 08:48:41 +00:00
parent 7c8d0f82f9
commit 1227e2c60c
128 changed files with 1616 additions and 440 deletions
Download Patch File Download Diff File Expand all files Collapse all files

12
reference/as.sir.md
View File

@@ -648,10 +648,10 @@ sir_interpretation_history()
#> # A tibble: 4 × 18
#> datetime index method ab_given mo_given host_given input_given
#> <dttm> <int> <chr> <chr> <chr> <chr> <chr>
#> 1 2025-12-15 12:29:02 1 MIC amoxicillin Escherich… human 8
#> 2 2025-12-15 12:29:02 1 MIC cipro Escherich… human 0.256
#> 3 2025-12-15 12:29:02 1 DISK tobra Escherich… human 16
#> 4 2025-12-15 12:29:03 1 DISK genta Escherich… human 18
#> 1 2025-12-22 08:45:24 1 MIC amoxicillin Escherich… human 8
#> 2 2025-12-22 08:45:24 1 MIC cipro Escherich… human 0.256
#> 3 2025-12-22 08:45:24 1 DISK tobra Escherich… human 16
#> 4 2025-12-22 08:45:24 1 DISK genta Escherich… human 18
#> # ℹ 11 more variables: ab <ab>, mo <mo>, host <chr>, input <chr>,
#> # outcome <sir>, notes <chr>, guideline <chr>, ref_table <chr>, uti <lgl>,
#> # breakpoint_S_R <chr>, site <chr>
@@ -852,12 +852,12 @@ as.sir(
# For CLEANING existing SIR values -------------------------------------
as.sir(c("S", "SDD", "I", "R", "NI", "A", "B", "C"))
#> Warning: in `as.sir()`: 3 results in index '20' truncated (38%) that were invalid
#> Warning: in `as.sir()`: 3 results in index '21' truncated (38%) that were invalid
#> antimicrobial interpretations: "A", "B", and "C"
#> Class 'sir'
#> [1] S SDD I R NI <NA> <NA> <NA>
as.sir("<= 0.002; S") # will return "S"
#> Warning: in `as.sir()`: 1 result in index '20' truncated (100%) that were invalid
#> Warning: in `as.sir()`: 1 result in index '21' truncated (100%) that were invalid
#> antimicrobial interpretations: "<= 0.002; S"
#> Class 'sir'
#> [1] <NA>