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2025-12-22 08:48:41 +00:00
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commit 1227e2c60c
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reference/random.md
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@@ -88,16 +88,16 @@ the `skew` and `severity` arguments:
``` r
random_mic(25)
#> Class 'mic'
#> [1] 0.008 0.016 0.25 0.5 0.5 1 0.002 0.002
#> [9] 0.001 0.064 0.002 0.064 <=0.0002 1 4 0.016
#> [17] 0.008 8 0.25 0.5 0.5 0.032 4 0.008
#> [25] 0.004
#> [1] 0.125 <=0.0001 0.004 0.004 0.5 0.032 1 0.008
#> [9] 128 0.0002 0.002 0.002 32 0.032 0.0005 0.0002
#> [17] 0.008 0.001 0.0002 <=0.0001 0.064 0.016 0.008 4
#> [25] 1
random_disk(25)
#> Class 'disk'
#> [1] 39 47 20 36 18 44 43 25 28 26 44 36 42 8 28 44 31 29 49 30 28 39 49 25 49
#> [1] 50 21 48 47 46 38 45 47 24 28 45 43 19 23 44 19 31 22 40 39 39 36 35 14 34
random_sir(25)
#> Class 'sir'
#> [1] I R S R S R R S I I I S R R S I I S I I I S S R S
#> [1] I S S R I S R I R I S S S R R R I I R R I S R R S
# add more skewedness, make more realistic by setting a bug and/or drug:
disks <- random_disk(100, severity = 2, mo = "Escherichia coli", ab = "CIP")
@@ -110,27 +110,27 @@ plot(disks, mo = "Escherichia coli", ab = "CIP", guideline = "CLSI 2025")
# \donttest{
random_mic(25, "Klebsiella pneumoniae") # range 0.0625-64
#> Class 'mic'
#> [1] 1 8 0.004 4 0.032 8 0.016 8 0.001 0.0002
#> [11] 0.002 0.004 0.001 0.0005 0.0001 0.002 0.125 >=64 0.002 0.0005
#> [21] 0.001 0.0002 0.0005 0.001 0.0005
#> [1] 0.0001 0.0002 0.016 0.5 0.008 >=8 0.125 0.0002 0.002 0.0005
#> [11] 1 0.0001 0.25 0.0002 0.25 2 0.0005 0.064 0.5 0.004
#> [21] 0.001 0.064 0.032 0.0005 0.125
random_mic(25, "Klebsiella pneumoniae", "meropenem") # range 0.0625-16
#> Class 'mic'
#> [1] <=0.5 <=0.5 <=0.5 1 <=0.5 <=0.5 <=0.5 <=0.5 <=0.5 <=0.5 1 1
#> [13] <=0.5 <=0.5 <=0.5 <=0.5 1 <=0.5 <=0.5 <=0.5 <=0.5 1 1 <=0.5
#> [25] <=0.5
#> [1] <=2 <=2 4 <=2 <=2 4 <=2 4 <=2 4 <=2 <=2 <=2 <=2 <=2 <=2 4 4 <=2
#> [20] 4 <=2 <=2 <=2 <=2 <=2
random_mic(25, "Streptococcus pneumoniae", "meropenem") # range 0.0625-4
#> Class 'mic'
#> [1] >=2 1 1 1 >=2 >=2 >=2 1 >=2 1 1 >=2 1 1 1 >=2 1 1 1
#> [20] >=2 >=2 1 1 1 1
#> [1] 2 <=0.064 1 <=0.064 <=0.064 2 <=0.064 0.25 0.25
#> [10] 2 <=0.064 <=0.064 <=0.064 <=0.064 0.25 0.5 0.5 0.25
#> [19] 0.125 0.125 4 0.25 1 <=0.064 <=0.064
random_disk(25, "Klebsiella pneumoniae") # range 8-50
#> Class 'disk'
#> [1] 28 12 30 26 9 34 30 19 32 31 33 34 30 19 15 24 18 34 12 32 29 33 29 32 17
#> [1] 14 19 19 33 33 26 16 27 29 33 24 17 17 15 16 26 26 14 17 29 25 25 24 32 32
random_disk(25, "Klebsiella pneumoniae", "ampicillin") # range 11-17
#> Class 'disk'
#> [1] 18 15 19 13 22 20 22 13 18 14 19 13 12 22 20 21 12 20 18 19 20 22 18 17 20
#> [1] 22 15 21 11 19 20 11 14 12 12 17 16 12 10 15 22 19 21 19 17 18 19 21 17 21
random_disk(25, "Streptococcus pneumoniae", "ampicillin") # range 12-27
#> Class 'disk'
#> [1] 21 31 27 28 30 34 16 32 28 25 25 23 29 26 24 28 27 33 30 19 30 22 27 22 32
#> [1] 21 25 16 29 27 24 31 22 35 28 26 32 24 18 35 33 24 28 33 25 35 25 32 24 26
# }
```