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unit tests 2

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dr. M.S. (Matthijs) Berends 2023-01-24 16:31:00 +01:00
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commit 126afb01a4
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2
DESCRIPTION
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Package: AMR Package: AMR
Version: 1.8.2.9102 Version: 1.8.2.9103
Date: 2023-01-24 Date: 2023-01-24
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)

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NEWS.md
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# AMR 1.8.2.9102 # AMR 1.8.2.9103
*(this beta version will eventually become v2.0! We're happy to reach a new major milestone soon!)* *(this beta version will eventually become v2.0! We're happy to reach a new major milestone soon!)*

6
inst/tinytest/test-_deprecated.R
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@ -55,10 +55,10 @@ expect_identical(suppressWarnings(is.rsi.eligible(example_isolates)),
suppressWarnings(is_sir_eligible(example_isolates))) suppressWarnings(is_sir_eligible(example_isolates)))
if (AMR:::pkg_is_available("ggplot2", also_load = FALSE)) { if (AMR:::pkg_is_available("ggplot2", also_load = FALSE)) {
expect_identical(suppressWarnings(ggplot_rsi(example_isolates[, c("CIP", "GEN", "TOB")])), expect_equal(suppressWarnings(ggplot_rsi(example_isolates[, c("CIP", "GEN", "TOB")])),
suppressWarnings(ggplot_sir(example_isolates[, c("CIP", "GEN", "TOB")]))) suppressWarnings(ggplot_sir(example_isolates[, c("CIP", "GEN", "TOB")])))
p <- ggplot2::ggplot(example_isolates[, c("CIP", "GEN", "TOB")]) p <- ggplot2::ggplot(example_isolates[, c("CIP", "GEN", "TOB")])
expect_equal(suppressWarnings(p + geom_rsi() + scale_rsi_colours() + labels_rsi_count() + facet_rsi() + theme_rsi()), expect_equal(suppressWarnings(p + geom_rsi() + scale_rsi_colours() + labels_rsi_count() + facet_rsi() + theme_rsi()),
suppressWarnings(p + geom_sir() + scale_sir_colours() + labels_sir_count() + facet_sir() + theme_sir())) suppressWarnings(p + geom_sir() + scale_sir_colours() + labels_sir_count() + facet_sir() + theme_sir()))
} }