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(v3.0.1.9076) fix: normalise year-qualified AMR_guideline option in all affected functions

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Matthijs Berends
2026-06-27 13:53:25 +02:00
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commit 12cabca29d
7 changed files with 33 additions and 13 deletions
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NEWS.md
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@@ -1,4 +1,4 @@
# AMR 3.0.1.9077
# AMR 3.0.1.9078
Planned as v3.1.0, end of June 2026.
@@ -20,6 +20,7 @@ Planned as v3.1.0, end of June 2026.
* New `wisca_plot()` to assess the susceptibility and incidence distributions from the Monte Carlo simulations
### Fixed
* Setting `options(AMR_guideline = "EUCAST 2012")` or any year-qualified value no longer causes errors or silent wrong behaviour in `interpretive_rules()`, `resistance()`, `susceptibility()`, `count_resistant()`, `count_susceptible()`, and SIR plotting/printing functions (#298)
* `as.sir()`
* On data frames: already-converted SIR columns no longer dropped on re-run (#278)
* Metadata columns (e.g. `patient`, `ward`) no longer misidentified as antibiotic columns