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reference/intrinsic_resistant.md

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+# Data Set Denoting Bacterial Intrinsic Resistance
+
+Data set containing 'EUCAST Expected Resistant Phenotypes' of *all*
+bug-drug combinations between the
+[microorganisms](https://amr-for-r.org/reference/microorganisms.md) and
+[antimicrobials](https://amr-for-r.org/reference/antimicrobials.md) data
+sets.
+
+## Usage
+
+``` r
+intrinsic_resistant
+```
+
+## Format
+
+A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 271
+905 observations and 2 variables:
+
+- `mo`  
+  Microorganism ID which occurs in
+  [`microorganisms$mo`](https://amr-for-r.org/reference/microorganisms.md).
+  Names can be retrieved using
+  [`mo_name()`](https://amr-for-r.org/reference/mo_property.md).
+
+- `ab`  
+  Antimicrobial ID which occurs in
+  [`antimicrobials$ab`](https://amr-for-r.org/reference/antimicrobials.md).
+  Names can be retrieved using
+  [`ab_name()`](https://amr-for-r.org/reference/ab_property.md).
+
+## Details
+
+This data set is currently based on ['EUCAST Expected Resistant
+Phenotypes'
+v1.2](https://www.eucast.org/expert_rules_and_expected_phenotypes)
+(2023).
+
+This data set is internally used by:
+
+- [`not_intrinsic_resistant()`](https://amr-for-r.org/reference/antimicrobial_selectors.md)
+  (an [antimicrobial
+  selector](https://amr-for-r.org/reference/antimicrobial_selectors.md))
+
+- [`mo_is_intrinsic_resistant()`](https://amr-for-r.org/reference/mo_property.md)
+
+## Download Our Reference Data
+
+All reference data sets in the AMR package - including information on
+microorganisms, antimicrobials, and clinical breakpoints - are freely
+available for download in multiple formats: R, MS Excel, Apache Feather,
+Apache Parquet, SPSS, and Stata.
+
+For maximum compatibility, we also provide machine-readable,
+tab-separated plain text files suitable for use in any software,
+including laboratory information systems.
+
+Visit [our website for direct download
+links](https://amr-for-r.org/articles/datasets.html), or explore the
+actual files in [our GitHub
+repository](https://github.com/msberends/AMR/tree/main/data-raw/datasets).
+
+## Examples
+
+``` r
+intrinsic_resistant
+#> # A tibble: 271,905 × 2
+#>    mo          ab  
+#>    <mo>        <ab>
+#>  1 B_GRAMP     ATM 
+#>  2 B_GRAMP     COL 
+#>  3 B_GRAMP     NAL 
+#>  4 B_GRAMP     PLB 
+#>  5 B_GRAMP     TEM 
+#>  6 B_ANAER-POS ATM 
+#>  7 B_ANAER-POS COL 
+#>  8 B_ANAER-POS NAL 
+#>  9 B_ANAER-POS PLB 
+#> 10 B_ANAER-POS TEM 
+#> # ℹ 271,895 more rows
+```