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+# Data Set with 534 Microorganisms In Species Groups
+
+A data set containing species groups and microbiological complexes,
+which are used in [the clinical breakpoints
+table](https://amr-for-r.org/reference/clinical_breakpoints.md).
+
+## Usage
+
+``` r
+microorganisms.groups
+```
+
+## Format
+
+A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 534
+observations and 4 variables:
+
+- `mo_group`  
+  ID of the species group / microbiological complex
+
+- `mo`  
+  ID of the microorganism belonging in the species group /
+  microbiological complex
+
+- `mo_group_name`  
+  Name of the species group / microbiological complex, as retrieved with
+  [`mo_name()`](https://amr-for-r.org/reference/mo_property.md)
+
+- `mo_name`  
+  Name of the microorganism belonging in the species group /
+  microbiological complex, as retrieved with
+  [`mo_name()`](https://amr-for-r.org/reference/mo_property.md)
+
+## Download Our Reference Data
+
+All reference data sets in the AMR package - including information on
+microorganisms, antimicrobials, and clinical breakpoints - are freely
+available for download in multiple formats: R, MS Excel, Apache Feather,
+Apache Parquet, SPSS, and Stata.
+
+For maximum compatibility, we also provide machine-readable,
+tab-separated plain text files suitable for use in any software,
+including laboratory information systems.
+
+Visit [our website for direct download
+links](https://amr-for-r.org/articles/datasets.html), or explore the
+actual files in [our GitHub
+repository](https://github.com/msberends/AMR/tree/main/data-raw/datasets).
+
+## See also
+
+[`as.mo()`](https://amr-for-r.org/reference/as.mo.md)
+[microorganisms](https://amr-for-r.org/reference/microorganisms.md)
+
+## Examples
+
+``` r
+microorganisms.groups
+#> # A tibble: 534 × 4
+#>    mo_group       mo           mo_group_name                   mo_name          
+#>    <mo>           <mo>         <chr>                           <chr>            
+#>  1 B_ACNTB_BMNN-C B_ACNTB_BMNN Acinetobacter baumannii complex Acinetobacter ba…
+#>  2 B_ACNTB_BMNN-C B_ACNTB_CLCC Acinetobacter baumannii complex Acinetobacter ca…
+#>  3 B_ACNTB_BMNN-C B_ACNTB_LCTC Acinetobacter baumannii complex Acinetobacter di…
+#>  4 B_ACNTB_BMNN-C B_ACNTB_NSCM Acinetobacter baumannii complex Acinetobacter no…
+#>  5 B_ACNTB_BMNN-C B_ACNTB_PITT Acinetobacter baumannii complex Acinetobacter pi…
+#>  6 B_ACNTB_BMNN-C B_ACNTB_SFRT Acinetobacter baumannii complex Acinetobacter se…
+#>  7 B_BCTRD_FRGL-C B_BCTRD_FRGL Bacteroides fragilis complex    Bacteroides frag…
+#>  8 B_BCTRD_FRGL-C B_BCTRD_OVTS Bacteroides fragilis complex    Bacteroides ovat…
+#>  9 B_BCTRD_FRGL-C B_BCTRD_THTT Bacteroides fragilis complex    Bacteroides thet…
+#> 10 B_BCTRD_FRGL-C B_PHCCL_VLGT Bacteroides fragilis complex    Bacteroides vulg…
+#> # ℹ 524 more rows
+
+# these are all species in the Bacteroides fragilis group, as per WHONET:
+microorganisms.groups[microorganisms.groups$mo_group == "B_BCTRD_FRGL-C", ]
+#> # A tibble: 5 × 4
+#>   mo_group       mo           mo_group_name                mo_name              
+#>   <mo>           <mo>         <chr>                        <chr>                
+#> 1 B_BCTRD_FRGL-C B_BCTRD_FRGL Bacteroides fragilis complex Bacteroides fragilis 
+#> 2 B_BCTRD_FRGL-C B_BCTRD_OVTS Bacteroides fragilis complex Bacteroides ovatus   
+#> 3 B_BCTRD_FRGL-C B_BCTRD_THTT Bacteroides fragilis complex Bacteroides thetaiot…
+#> 4 B_BCTRD_FRGL-C B_PHCCL_VLGT Bacteroides fragilis complex Bacteroides vulgatus 
+#> 5 B_BCTRD_FRGL-C B_PRBCT_DSTS Bacteroides fragilis complex Parabacteroides dist…
+```