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@ -15,7 +15,7 @@
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@ -401,18 +401,18 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 R R S R S I</span></span>
<span><span class="co">#&gt; 2 S S S S R I</span></span>
<span><span class="co">#&gt; 3 S S R S S I</span></span>
<span><span class="co">#&gt; 4 I I R I I I</span></span>
<span><span class="co">#&gt; 5 I I I R I R</span></span>
<span><span class="co">#&gt; 6 R S I R I I</span></span>
<span><span class="co">#&gt; 1 S R S S S S</span></span>
<span><span class="co">#&gt; 2 R S S S I I</span></span>
<span><span class="co">#&gt; 3 I S I R R S</span></span>
<span><span class="co">#&gt; 4 R R S S S S</span></span>
<span><span class="co">#&gt; 5 R R S I R I</span></span>
<span><span class="co">#&gt; 6 I R I I I R</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 2 R</span></span>
<span><span class="co">#&gt; 3 I</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 2 S</span></span>
<span><span class="co">#&gt; 3 R</span></span>
<span><span class="co">#&gt; 4 R</span></span>
<span><span class="co">#&gt; 5 R</span></span>
<span><span class="co">#&gt; 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
@ -454,40 +454,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3252</td>
<td align="right">65.04%</td>
<td align="right">3252</td>
<td align="right">65.04%</td>
<td align="right">3206</td>
<td align="right">64.12%</td>
<td align="right">3206</td>
<td align="right">64.12%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">927</td>
<td align="right">18.54%</td>
<td align="right">4179</td>
<td align="right">83.58%</td>
<td align="right">991</td>
<td align="right">19.82%</td>
<td align="right">4197</td>
<td align="right">83.94%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">475</td>
<td align="right">9.50%</td>
<td align="right">4654</td>
<td align="right">93.08%</td>
<td align="right">434</td>
<td align="right">8.68%</td>
<td align="right">4631</td>
<td align="right">92.62%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">242</td>
<td align="right">4.84%</td>
<td align="right">4896</td>
<td align="right">97.92%</td>
<td align="right">260</td>
<td align="right">5.20%</td>
<td align="right">4891</td>
<td align="right">97.82%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">104</td>
<td align="right">2.08%</td>
<td align="right">109</td>
<td align="right">2.18%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>