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(v0.7.1.9005) new rsi calculations, atc class removal

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dr. M.S. (Matthijs) Berends
2019-07-01 14:03:15 +02:00
parent 65c6702b21
commit 156d550895
78 changed files with 1169 additions and 911 deletions
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man/as.mo.Rd
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@ -88,12 +88,9 @@ This means that looking up human pathogenic microorganisms takes less time than
\strong{Uncertain results} \cr
The algorithm can additionally use three different levels of uncertainty to guess valid results. The default is \code{allow_uncertain = TRUE}, which is equal to uncertainty level 2. Using \code{allow_uncertain = FALSE} will skip all of these additional rules:
\itemize{
\item{(uncertainty level 1): It tries to look for only matching genera}
\item{(uncertainty level 1): It tries to look for previously accepted (but now invalid) taxonomic names}
\item{(uncertainty level 2): It strips off values between brackets and the brackets itself, and re-evaluates the input with all previous rules}
\item{(uncertainty level 2): It strips off words from the end one by one and re-evaluates the input with all previous rules}
\item{(uncertainty level 3): It strips off words from the start one by one and re-evaluates the input with all previous rules}
\item{(uncertainty level 3): It tries any part of the name}
\item{(uncertainty level 1): It tries to look for only matching genera, previously accepted (but now invalid) taxonomic names and misspelled input}
\item{(uncertainty level 2): It removed parts between brackets, strips off words from the end one by one and re-evaluates the input with all previous rules}
\item{(uncertainty level 3): It strips off words from the start one by one and tries any part of the name}
}
You can also use e.g. \code{as.mo(..., allow_uncertain = 1)} to only allow up to level 1 uncertainty.