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(v0.7.1.9005) new rsi calculations, atc class removal

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dr. M.S. (Matthijs) Berends
2019-07-01 14:03:15 +02:00
parent 65c6702b21
commit 156d550895
78 changed files with 1169 additions and 911 deletions
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man/as.rsi.Rd
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@ -52,7 +52,7 @@ The function \code{is.rsi.eligible} returns \code{TRUE} when a columns contains
}
\section{Interpretation of S, I and R}{
In 2019, EUCAST has decided to change the definitions of susceptibility testing categories S, I and R as shown below. Results of several consultations on the new definitions are available on the EUCAST website under "Consultations".
In 2019, EUCAST has decided to change the definitions of susceptibility testing categories S, I and R as shown below (\url{http://www.eucast.org/newsiandr/}). Results of several consultations on the new definitions are available on the EUCAST website under "Consultations".
\itemize{
\item{\strong{S} - }{Susceptible, standard dosing regimen: A microorganism is categorised as "Susceptible, standard dosing regimen", when there is a high likelihood of therapeutic success using a standard dosing regimen of the agent.}
@ -62,9 +62,7 @@ In 2019, EUCAST has decided to change the definitions of susceptibility testing
Exposure is a function of how the mode of administration, dose, dosing interval, infusion time, as well as distribution and excretion of the antimicrobial agent will influence the infecting organism at the site of infection.
Source: \url{http://www.eucast.org/newsiandr/}.
\strong{This AMR package honours this new insight.}
This AMR package honours this new insight. Use \code{\link{portion_SI}} to determine antimicrobial susceptibility and \code{\link{count_SI}} to count susceptible isolates.
}
\section{Read more on our website!}{