P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-10 05:01:58 +02:00
Code Releases Activity

(v2.1.1.9121) support tidymodels

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2024-12-19 20:17:15 +01:00
parent 8249cfda46
commit 15fc72fc66
16 changed files with 638 additions and 89 deletions
Download Patch File Download Diff File Expand all files Collapse all files

5
R/aa_helper_functions.R
View File

@ -988,7 +988,7 @@ get_current_data <- function(arg_name, call) {
for (env in frms[which(with_mask)]) {
if (is.function(env$mask$current_rows) && (valid_df(env$data) || valid_df(env$`.data`))) {
# an element `.data` or `data` (containing all data) and `mask` (containing functions) will be in the environment when using dplyr verbs
# we use their mask$current_rows() to get the group rows, since dplyr::cur_data_all() is deprecated and will be removed in the future
# we use their mask$current_rows() below to get the group rows, since dplyr::cur_data_all() is deprecated and will be removed in the future
# e.g. for `example_isolates %>% group_by(ward) %>% mutate(first = first_isolate(.))`
if (valid_df(env$data)) {
# support for dplyr 1.1.x
@ -1008,6 +1008,9 @@ get_current_data <- function(arg_name, call) {
if (valid_df(env$`.data`)) {
# an element `.data` will be in the environment when using dplyr::select()
return(env$`.data`)
} else if (valid_df(env$data)) {
# an element `data` will be in the environment when using older dplyr versions, or tidymodels
return(env$data)
} else if (valid_df(env$xx)) {
# an element `xx` will be in the environment for rows + cols in base R, e.g. `example_isolates[c(1:3), carbapenems()]`
return(env$xx)