P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-08 16:02:02 +02:00
Code Releases Activity

fixes #58

Browse Source 
fixes #54
fixes #51
This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-09-23 12:55:52 +02:00
parent 96a9fd0382
commit 1724e6d3f3
36 changed files with 233 additions and 252 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
data-raw/_pre_commit_hook.R
View File

@ -177,7 +177,7 @@ MO_PREVALENT_GENERA <- c(
"Microsporidium", "Microsporum", "Mortierella", "Mucor", "Mycocentrospora", "Mycoplasma", "Myroides", "Necator",
"Nectria", "Ochroconis", "Odoribacter", "Oesophagostomum", "Oidiodendron", "Opisthorchis",
"Ornithobacterium", "Parabacteroides", "Pediculus", "Pedobacter", "Phlebotomus", "Phocaeicola",
"Phocanema", "Phoma", "Piedraia", "Pithomyces", "Pityrosporum", "Porphyromonas", "Prevotella",
"Phocanema", "Phoma", "Piedraia", "Pithomyces", "Pityrosporum", "Pneumocystis", "Porphyromonas", "Prevotella",
"Pseudallescheria", "Pseudoterranova", "Pulex", "Rhizomucor", "Rhizopus", "Rhodotorula", "Riemerella",
"Saccharomyces", "Sarcoptes", "Scolecobasidium", "Scopulariopsis", "Scytalidium", "Sphingobacterium",
"Spirometra", "Spiroplasma", "Sporobolomyces", "Stachybotrys", "Streptobacillus", "Strongyloides",

BIN
data-raw/microorganisms.dta
View File

Binary file not shown.

BIN
data-raw/microorganisms.feather
View File

Binary file not shown.

2
data-raw/microorganisms.md5
View File

@ -1 +1 @@
fd8e7edf6febc16c6549dcf33932b589
8a398d697f3a66e4049c0b5d9d5e8ade

BIN
data-raw/microorganisms.parquet
View File

Binary file not shown.

BIN
data-raw/microorganisms.rds
View File

Binary file not shown.

BIN
data-raw/microorganisms.sas
View File

Binary file not shown.

BIN
data-raw/microorganisms.sav
View File

Binary file not shown.

BIN
data-raw/microorganisms.xlsx
View File

Binary file not shown.

38
data-raw/reproduction_of_microorganisms.R
View File

@ -997,13 +997,25 @@ taxonomy <- taxonomy %>%
arrange(fullname) %>%
distinct(fullname, .keep_all = TRUE)
# Remove unwanted taxonomic entries from Protoza/Fungi --------------------
# this must be done after the microbial ID generation, since it will otherwise generate a lot of different IDs
taxonomy <- taxonomy %>%
filter(
# Protozoa:
!(phylum %in% c("Choanozoa", "Mycetozoa") & prevalence == 3),
# Fungi:
!(phylum %in% c("Ascomycota", "Zygomycota", "Basidiomycota") & prevalence == 3),
!(genus %in% c("Phoma", "Leptosphaeria") & rank %in% c("species", "subspecies")), # only genus of this rare fungus, with resp. 1300 and 800 species
# (leave Alternaria in there, part of human mycobiome and opportunistic pathogen)
# Animalia:
!genus %in% c("Lucilia", "Lumbricus"),
!(genus %in% c("Aedes", "Anopheles") & rank %in% c("species", "subspecies")), # only genus of the many hundreds of mosquitoes species
kingdom != "Plantae") # this kingdom only contained Curvularia and Hymenolepis, which have coincidental twin names with Fungi
message("\nCongratulations! The new taxonomic table will contain ", format(nrow(taxonomy), big.mark = ","), " rows.\n")
# taxonomy <- taxonomy %>%
# bind_rows(taxonomy %>%
# filter(mo == "B_STRPT_GRPK") %>%
# mutate(mo = gsub("GRPK", "GRPL", as.character(mo)), fullname = "Streptococcus group L", species = "group L")) %>%
# arrange(fullname)
# Add SNOMED CT -----------------------------------------------------------
@ -1035,12 +1047,10 @@ snomed <- snomed %>%
summarise(snomed = list(snomed))
taxonomy <- taxonomy %>%
left_join(snomed, by = "fullname") %>%
# just to be sure:
AMR:::dataset_UTF8_to_ASCII()
left_join(snomed, by = "fullname")
# Save to package ---------------------------------------------------------
# Clean data set ----------------------------------------------------------
# format to tibble and check again for invalid characters
taxonomy <- taxonomy %>%
@ -1050,20 +1060,26 @@ taxonomy <- taxonomy %>%
# set class <mo>
class(taxonomy$mo) <- c("mo", "character")
# --- Moraxella catarrhalis was named Branhamella catarrhalis (Catlin, 1970), but this is unaccepted in clinical microbiology
# Moraxella catarrhalis was named Branhamella catarrhalis (Catlin, 1970), but this is unaccepted in clinical microbiology
# we keep them both
taxonomy$status[which(taxonomy$fullname == "Moraxella catarrhalis")]
taxonomy$lpsn_renamed_to[which(taxonomy$fullname == "Moraxella catarrhalis")]
taxonomy$status[which(taxonomy$fullname == "Moraxella catarrhalis")] <- "accepted"
taxonomy$lpsn_renamed_to[which(taxonomy$fullname == "Moraxella catarrhalis")] <- NA_character_
taxonomy <- taxonomy %>%
AMR:::dataset_UTF8_to_ASCII()
# Save to package ---------------------------------------------------------
microorganisms <- taxonomy
usethis::use_data(microorganisms, overwrite = TRUE, version = 2, compress = "xz")
rm(microorganisms)
# DON'T FORGET TO UPDATE R/globals.R!
# Test updates ------------------------------------------------------------
# and check: these codes should not be missing (will otherwise throw a unit test error):

2
data-raw/rsi.md5
View File

@ -1 +1 @@
42c3626166f4521af288bb3d70a17271
9434cfd3f9c6bab485a7c00e59821b61

BIN
data-raw/rsi_translation.dta
View File

Binary file not shown.

BIN
data-raw/rsi_translation.feather
View File

Binary file not shown.

BIN
data-raw/rsi_translation.parquet
View File

Binary file not shown.

BIN
data-raw/rsi_translation.rds
View File

Binary file not shown.

BIN
data-raw/rsi_translation.sas
View File

Binary file not shown.

BIN
data-raw/rsi_translation.sav
View File

Binary file not shown.

136
data-raw/rsi_translation.txt
View File

@ -8,7 +8,7 @@
"EUCAST 2022" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2022" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2022" "MIC" "F_CRYPT_NFRM" "Cryptococcus neoformans" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2022" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2022" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2022" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 19 19 FALSE
"EUCAST 2022" "DISK" "UTI" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 16 16 TRUE
"EUCAST 2022" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
@ -82,7 +82,7 @@
"EUCAST 2022" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2022" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Candida" 4 4 FALSE
"EUCAST 2022" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2022" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2022" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2022" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30" 26 21 FALSE
"EUCAST 2022" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2022" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseudo" "30" 50 18 FALSE
@ -1068,7 +1068,7 @@
"EUCAST 2021" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2021" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2021" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2021" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2021" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2021" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 19 19 FALSE
"EUCAST 2021" "DISK" "UTI" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 16 16 TRUE
"EUCAST 2021" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
@ -1140,7 +1140,7 @@
"EUCAST 2021" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2021" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Candida" 0.002 4 FALSE
"EUCAST 2021" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2021" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2021" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2021" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30" 26 21 FALSE
"EUCAST 2021" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2021" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseudo" "30" 50 18 FALSE
@ -1957,7 +1957,7 @@
"EUCAST 2020" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2020" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2020" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2020" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2020" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2020" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 19 19 FALSE
"EUCAST 2020" "DISK" "UTI" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 16 16 TRUE
"EUCAST 2020" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
@ -2027,7 +2027,7 @@
"EUCAST 2020" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2020" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Candida" 0.002 4 FALSE
"EUCAST 2020" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2020" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2020" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2020" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30" 26 21 FALSE
"EUCAST 2020" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2020" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseudo" "30" 50 18 FALSE
@ -2765,7 +2765,7 @@
"EUCAST 2019" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2019" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2019" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2019" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2019" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2019" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 19 19 FALSE
"EUCAST 2019" "DISK" "UTI" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 16 16 TRUE
"EUCAST 2019" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
@ -2824,7 +2824,7 @@
"EUCAST 2019" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2019" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Candida" 0.002 4 FALSE
"EUCAST 2019" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2019" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2019" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2019" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30" 26 21 FALSE
"EUCAST 2019" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2019" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseudo" "30" 18 18 FALSE
@ -3506,7 +3506,7 @@
"EUCAST 2018" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2018" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2018" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2018" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2018" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2018" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 19 19 FALSE
"EUCAST 2018" "DISK" "UTI" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 16 16 TRUE
"EUCAST 2018" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
@ -3562,7 +3562,7 @@
"EUCAST 2018" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2018" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Candida" 0.002 4 FALSE
"EUCAST 2018" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2018" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2018" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2018" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30" 26 21 FALSE
"EUCAST 2018" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2018" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseudo" "30" 50 16 FALSE
@ -4231,7 +4231,7 @@
"EUCAST 2017" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2017" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2017" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2017" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2017" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2017" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 19 19 FALSE
"EUCAST 2017" "DISK" "UTI" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 16 16 TRUE
"EUCAST 2017" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
@ -4287,7 +4287,7 @@
"EUCAST 2017" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2017" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Candida" 0.002 4 FALSE
"EUCAST 2017" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2017" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2017" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2017" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30" 26 21 FALSE
"EUCAST 2017" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2017" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseudo" "30" 50 16 FALSE
@ -4946,7 +4946,7 @@
"EUCAST 2016" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2016" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2016" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2016" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2016" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2016" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 19 19 FALSE
"EUCAST 2016" "DISK" "UTI" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 16 16 TRUE
"EUCAST 2016" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
@ -4999,7 +4999,7 @@
"EUCAST 2016" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2016" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Candida" 0.002 4 FALSE
"EUCAST 2016" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2016" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2016" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2016" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30" 24 21 FALSE
"EUCAST 2016" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2016" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseudo" "30" 50 16 FALSE
@ -5597,7 +5597,7 @@
"EUCAST 2015" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2015" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2015" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2015" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2015" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2015" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 19 19 FALSE
"EUCAST 2015" "DISK" "UTI" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 16 16 TRUE
"EUCAST 2015" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
@ -5650,7 +5650,7 @@
"EUCAST 2015" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2015" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Candida" 0.002 4 FALSE
"EUCAST 2015" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2015" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2015" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2015" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30" 24 21 FALSE
"EUCAST 2015" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2015" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseudo" "30" 50 16 FALSE
@ -6224,7 +6224,7 @@
"EUCAST 2014" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2014" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2014" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2014" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2014" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2014" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 19 19 FALSE
"EUCAST 2014" "DISK" "UTI" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20-10" 16 16 TRUE
"EUCAST 2014" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
@ -6277,7 +6277,7 @@
"EUCAST 2014" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2014" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Candida" 0.002 4 FALSE
"EUCAST 2014" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2014" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2014" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2014" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30" 24 21 FALSE
"EUCAST 2014" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2014" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseudo" "30" 50 16 FALSE
@ -6846,7 +6846,7 @@
"EUCAST 2013" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2013" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2013" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2013" "MIC" "F_PICHI" "Pichia" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2013" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "AMB" "Amphotericin B" "Candida" 1 1 FALSE
"EUCAST 2013" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" "20/10ug" 17 17 FALSE
"EUCAST 2013" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Enterobacteriaceae" 8 8 FALSE
"EUCAST 2013" "MIC" "B_ENTRC" "Enterococcus" 3 "AMC" "Amoxicillin/clavulanic acid" "Enterococcus" 4 8 FALSE
@ -6896,7 +6896,7 @@
"EUCAST 2013" "MIC" "F_CANDD_ALBC" "Candida albicans" 2 "ANI" "Anidulafungin" "Candida" 0.032 0.032 FALSE
"EUCAST 2013" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2013" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2013" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2013" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Candida" 0.064 0.064 FALSE
"EUCAST 2013" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" "30ug" 24 21 FALSE
"EUCAST 2013" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Enterobacteriaceae" 1 4 FALSE
"EUCAST 2013" "DISK" "B_PSDMN" "Pseudomonas" 3 "ATM" "Aztreonam" "Pseud" "30ug" 50 16 FALSE
@ -8481,8 +8481,8 @@
"CLSI 2022" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2022" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2022" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "MIC" "F_MYRZY_GLLR" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2022" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Table 2A" "30ug" 21 17 FALSE
"CLSI 2022" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Table 2A" 4 16 FALSE
"CLSI 2022" "DISK" "B_AERMN" "Aeromonas" 3 "ATM" "Aztreonam" "M45 Table 2" "30ug" 21 17 FALSE
@ -8532,10 +8532,10 @@
"CLSI 2022" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2022" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2022" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "DISK" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "CAS" "Caspofungin" "Table 1" 13 10 FALSE
"CLSI 2022" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2022" "DISK" "F_PICHI" "Pichia" 3 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2022" "MIC" "F_PICHI" "Pichia" 3 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "DISK" "F_MYRZY_GLLR" 2 "CAS" "Caspofungin" "Table 1" 13 10 FALSE
"CLSI 2022" "MIC" "F_MYRZY_GLLR" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2022" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2022" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "CAT" "Cefetamet" "Table 2A" "10ug" 18 14 FALSE
"CLSI 2022" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "CAT" "Cefetamet" "Table 2A" 4 16 FALSE
"CLSI 2022" "DISK" "B_HMPHL_INFL" "Haemophilus influenzae" 2 "CAT" "Cefetamet" "Table 2E" "10ug" 18 14 FALSE
@ -9292,10 +9292,10 @@
"CLSI 2022" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2022" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2022" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "DISK" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "MIF" "Micafungin" "Table 1" 16 13 FALSE
"CLSI 2022" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2022" "DISK" "F_PICHI" "Pichia" 3 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2022" "MIC" "F_PICHI" "Pichia" 3 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "DISK" "F_MYRZY_GLLR" 2 "MIF" "Micafungin" "Table 1" 16 13 FALSE
"CLSI 2022" "MIC" "F_MYRZY_GLLR" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2022" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2022" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2022" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "MNO" "Minocycline" "Table 2A" "30ug" 16 12 FALSE
"CLSI 2022" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "MNO" "Minocycline" "Table 2A" 4 16 FALSE
"CLSI 2022" "DISK" "B_ACNTB" "Acinetobacter" 3 "MNO" "Minocycline" "Table 2B-2" "30ug" 16 12 FALSE
@ -9679,8 +9679,8 @@
"CLSI 2022" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "VOR" "Voriconazole" "Table 1" 0.125 1 FALSE
"CLSI 2022" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "VOR" "Voriconazole" "Table 1" 17 14 FALSE
"CLSI 2022" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "VOR" "Voriconazole" "Table 1" 0.125 1 FALSE
"CLSI 2022" "DISK" "F_PICHI" "Pichia" 3 "VOR" "Voriconazole" "Table 1" 15 12 FALSE
"CLSI 2022" "MIC" "F_PICHI" "Pichia" 3 "VOR" "Voriconazole" "Table 1" 0.5 2 FALSE
"CLSI 2022" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "VOR" "Voriconazole" "Table 1" 15 12 FALSE
"CLSI 2022" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "VOR" "Voriconazole" "Table 1" 0.5 2 FALSE
"CLSI 2021" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Table 2A" "20ug/10ug" 18 13 FALSE
"CLSI 2021" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Table 2A" 8 32 FALSE
"CLSI 2021" "DISK" "B_AERMN" "Aeromonas" 3 "AMC" "Amoxicillin/clavulanic acid" "M45 Table 2" "20ug" 18 13 FALSE
@ -9745,8 +9745,8 @@
"CLSI 2021" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2021" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2021" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "MIC" "F_MYRZY_GLLR" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2021" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Table 2A" "30ug" 21 17 FALSE
"CLSI 2021" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Table 2A" 4 16 FALSE
"CLSI 2021" "DISK" "B_AERMN" "Aeromonas" 3 "ATM" "Aztreonam" "M45 Table 2" "30ug" 21 17 FALSE
@ -9792,10 +9792,10 @@
"CLSI 2021" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2021" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2021" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "DISK" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "CAS" "Caspofungin" "Table 1" 13 10 FALSE
"CLSI 2021" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2021" "DISK" "F_PICHI" "Pichia" 3 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2021" "MIC" "F_PICHI" "Pichia" 3 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "DISK" "F_MYRZY_GLLR" 2 "CAS" "Caspofungin" "Table 1" 13 10 FALSE
"CLSI 2021" "MIC" "F_MYRZY_GLLR" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2021" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2021" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "CAT" "Cefetamet" "Table 2A" "10ug" 18 14 FALSE
"CLSI 2021" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "CAT" "Cefetamet" "Table 2A" 4 16 FALSE
"CLSI 2021" "DISK" "B_HMPHL" "Haemophilus" 3 "CAT" "Cefetamet" "Table 2E" "10ug" 18 14 FALSE
@ -10488,10 +10488,10 @@
"CLSI 2021" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2021" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2021" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "DISK" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "MIF" "Micafungin" "Table 1" 16 13 FALSE
"CLSI 2021" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2021" "DISK" "F_PICHI" "Pichia" 3 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2021" "MIC" "F_PICHI" "Pichia" 3 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "DISK" "F_MYRZY_GLLR" 2 "MIF" "Micafungin" "Table 1" 16 13 FALSE
"CLSI 2021" "MIC" "F_MYRZY_GLLR" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2021" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2021" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2021" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "MNO" "Minocycline" "Table 2A" "30ug" 16 12 FALSE
"CLSI 2021" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "MNO" "Minocycline" "Table 2A" 4 16 FALSE
"CLSI 2021" "DISK" "B_ACNTB" "Acinetobacter" 3 "MNO" "Minocycline" "Table 2B-2" "30ug" 16 12 FALSE
@ -10861,8 +10861,8 @@
"CLSI 2021" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "VOR" "Voriconazole" "Table 1" 0.125 1 FALSE
"CLSI 2021" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "VOR" "Voriconazole" "Table 1" 17 14 FALSE
"CLSI 2021" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "VOR" "Voriconazole" "Table 1" 0.125 1 FALSE
"CLSI 2021" "DISK" "F_PICHI" "Pichia" 3 "VOR" "Voriconazole" "Table 1" 15 12 FALSE
"CLSI 2021" "MIC" "F_PICHI" "Pichia" 3 "VOR" "Voriconazole" "Table 1" 0.5 2 FALSE
"CLSI 2021" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "VOR" "Voriconazole" "Table 1" 15 12 FALSE
"CLSI 2021" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "VOR" "Voriconazole" "Table 1" 0.5 2 FALSE
"CLSI 2020" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Table 2A" "20ug/10ug" 18 13 FALSE
"CLSI 2020" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "AMC" "Amoxicillin/clavulanic acid" "Table 2A" 8 32 FALSE
"CLSI 2020" "DISK" "B_AERMN" "Aeromonas" 3 "AMC" "Amoxicillin/clavulanic acid" "M45 Table 2" "20ug" 18 13 FALSE
@ -10927,8 +10927,8 @@
"CLSI 2020" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2020" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2020" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "MIC" "F_MYRZY_GLLR" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2020" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Table 2A" "30ug" 21 17 FALSE
"CLSI 2020" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "ATM" "Aztreonam" "Table 2A" 4 16 FALSE
"CLSI 2020" "DISK" "B_AERMN" "Aeromonas" 3 "ATM" "Aztreonam" "M45 Table 2" "30ug" 21 17 FALSE
@ -10971,10 +10971,10 @@
"CLSI 2020" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2020" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2020" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "DISK" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "CAS" "Caspofungin" "Table 1" 13 10 FALSE
"CLSI 2020" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2020" "DISK" "F_PICHI" "Pichia" 3 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2020" "MIC" "F_PICHI" "Pichia" 3 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "DISK" "F_MYRZY_GLLR" 2 "CAS" "Caspofungin" "Table 1" 13 10 FALSE
"CLSI 2020" "MIC" "F_MYRZY_GLLR" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2020" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2020" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "CAT" "Cefetamet" "Table 2A" "10ug" 18 14 FALSE
"CLSI 2020" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "CAT" "Cefetamet" "Table 2A" 4 16 FALSE
"CLSI 2020" "DISK" "B_HMPHL" "Haemophilus" 3 "CAT" "Cefetamet" "Table 2E" "10ug" 18 14 FALSE
@ -11658,10 +11658,10 @@
"CLSI 2020" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2020" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2020" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "DISK" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "MIF" "Micafungin" "Table 1" 16 13 FALSE
"CLSI 2020" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2020" "DISK" "F_PICHI" "Pichia" 3 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2020" "MIC" "F_PICHI" "Pichia" 3 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "DISK" "F_MYRZY_GLLR" 2 "MIF" "Micafungin" "Table 1" 16 13 FALSE
"CLSI 2020" "MIC" "F_MYRZY_GLLR" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2020" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2020" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2020" "DISK" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "MNO" "Minocycline" "Table 2A" "30ug" 16 12 FALSE
"CLSI 2020" "MIC" "B_[ORD]_ENTRBCTR" "Enterobacterales" 5 "MNO" "Minocycline" "Table 2A" 4 16 FALSE
"CLSI 2020" "DISK" "B_ACNTB" "Acinetobacter" 3 "MNO" "Minocycline" "Table 2B-2" "30ug" 16 12 FALSE
@ -12038,8 +12038,8 @@
"CLSI 2020" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "VOR" "Voriconazole" "Table 1" 0.125 1 FALSE
"CLSI 2020" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "VOR" "Voriconazole" "Table 1" 17 14 FALSE
"CLSI 2020" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "VOR" "Voriconazole" "Table 1" 0.125 1 FALSE
"CLSI 2020" "DISK" "F_PICHI" "Pichia" 3 "VOR" "Voriconazole" "Table 1" 15 12 FALSE
"CLSI 2020" "MIC" "F_PICHI" "Pichia" 3 "VOR" "Voriconazole" "Table 1" 0.5 2 FALSE
"CLSI 2020" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "VOR" "Voriconazole" "Table 1" 15 12 FALSE
"CLSI 2020" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "VOR" "Voriconazole" "Table 1" 0.5 2 FALSE
"CLSI 2019" "DISK" "B_AERMN" "Aeromonas" 3 "AMC" "Amoxicillin/clavulanic acid" "M45 Table 2" "20ug" 18 13 FALSE
"CLSI 2019" "MIC" "B_AGGRG" "Aggregatibacter" 3 "AMC" "Amoxicillin/clavulanic acid" "M45 Table 9" 4 8 FALSE
"CLSI 2019" "MIC" "B_BRKHL_PSDM" "Burkholderia pseudomallei" 2 "AMC" "Amoxicillin/clavulanic acid" "M45 Table 21" 8 32 FALSE
@ -12098,8 +12098,8 @@
"CLSI 2019" "MIC" "F_CANDD_KRUS" "Candida krusei" 2 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2019" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2019" "MIC" "F_PICHI" "Pichia" 3 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "MIC" "F_MYRZY_GLLR" 2 "ANI" "Anidulafungin" "Table 1" 2 8 FALSE
"CLSI 2019" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "ANI" "Anidulafungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "DISK" "B_AERMN" "Aeromonas" 3 "ATM" "Aztreonam" "M45 Table 2" "30ug" 21 17 FALSE
"CLSI 2019" "MIC" "B_AERMN" "Aeromonas" 3 "ATM" "Aztreonam" "M45 Table 3" 4 16 FALSE
"CLSI 2019" "MIC" "B_GRAMN" "(unknown Gram-negatives)" 2 "ATM" "Aztreonam" "Table 2B-5" 8 32 FALSE
@ -12140,10 +12140,10 @@
"CLSI 2019" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2019" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2019" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "DISK" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "CAS" "Caspofungin" "Table 1" 13 10 FALSE
"CLSI 2019" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2019" "DISK" "F_PICHI" "Pichia" 3 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2019" "MIC" "F_PICHI" "Pichia" 3 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "DISK" "F_MYRZY_GLLR" 2 "CAS" "Caspofungin" "Table 1" 13 10 FALSE
"CLSI 2019" "MIC" "F_MYRZY_GLLR" 2 "CAS" "Caspofungin" "Table 1" 2 8 FALSE
"CLSI 2019" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "CAS" "Caspofungin" "Table 1" 17 14 FALSE
"CLSI 2019" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "CAS" "Caspofungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "DISK" "B_HMPHL" "Haemophilus" 3 "CAT" "Cefetamet" "Table 2E" "10ug" 18 14 FALSE
"CLSI 2019" "MIC" "B_HMPHL" "Haemophilus" 3 "CAT" "Cefetamet" "Table 2E" 4 16 FALSE
"CLSI 2019" "DISK" "B_ACNTB" "Acinetobacter" 3 "CAZ" "Ceftazidime" "Table 2B-2" "30ug" 18 14 FALSE
@ -12740,10 +12740,10 @@
"CLSI 2019" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2019" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2019" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "DISK" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "MIF" "Micafungin" "Table 1" 16 13 FALSE
"CLSI 2019" "MIC" "F_MYRZY_GLLR" "Meyerozyma guilliermondii" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2019" "DISK" "F_PICHI" "Pichia" 3 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2019" "MIC" "F_PICHI" "Pichia" 3 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "DISK" "F_MYRZY_GLLR" 2 "MIF" "Micafungin" "Table 1" 16 13 FALSE
"CLSI 2019" "MIC" "F_MYRZY_GLLR" 2 "MIF" "Micafungin" "Table 1" 2 8 FALSE
"CLSI 2019" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "MIF" "Micafungin" "Table 1" 22 19 FALSE
"CLSI 2019" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "MIF" "Micafungin" "Table 1" 0.25 1 FALSE
"CLSI 2019" "DISK" "B_ACNTB" "Acinetobacter" 3 "MNO" "Minocycline" "Table 2B-2" "30ug" 16 12 FALSE
"CLSI 2019" "MIC" "B_ACNTB" "Acinetobacter" 3 "MNO" "Minocycline" "Table 2B-2" 4 16 FALSE
"CLSI 2019" "DISK" "B_BRKHL_CEPC" "Burkholderia cepacia" 2 "MNO" "Minocycline" "Table 2B-3" "30ug" 19 14 FALSE
@ -13074,8 +13074,8 @@
"CLSI 2019" "MIC" "F_CANDD_PRPS" "Candida parapsilosis" 2 "VOR" "Voriconazole" "Table 1" 0.125 1 FALSE
"CLSI 2019" "DISK" "F_CANDD_TRPC" "Candida tropicalis" 2 "VOR" "Voriconazole" "Table 1" 17 14 FALSE
"CLSI 2019" "MIC" "F_CANDD_TRPC" "Candida tropicalis" 2 "VOR" "Voriconazole" "Table 1" 0.125 1 FALSE
"CLSI 2019" "DISK" "F_PICHI" "Pichia" 3 "VOR" "Voriconazole" "Table 1" 15 12 FALSE
"CLSI 2019" "MIC" "F_PICHI" "Pichia" 3 "VOR" "Voriconazole" "Table 1" 0.5 2 FALSE
"CLSI 2019" "DISK" "F_PICHI" "Pithomyces djbhatii" 3 "VOR" "Voriconazole" "Table 1" 15 12 FALSE
"CLSI 2019" "MIC" "F_PICHI" "Pithomyces djbhatii" 3 "VOR" "Voriconazole" "Table 1" 0.5 2 FALSE
"CLSI 2018" "DISK" "B_AERMN" "Aeromonas" 3 "AMC" "Amoxicillin/clavulanic acid" "M45 Table 2" "20ug" 18 13 FALSE
"CLSI 2018" "MIC" "B_AERMN" "Aeromonas" 3 "AMC" "Amoxicillin/clavulanic acid" "M45 Table 2" 8 32 FALSE
"CLSI 2018" "MIC" "B_AGGRG" "Aggregatibacter" 3 "AMC" "Amoxicillin/clavulanic acid" "M45 Table 7" 4 8 FALSE

BIN
data-raw/rsi_translation.xlsx
View File

Binary file not shown.