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re-add atc_ddd and atc_groups

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dr. M.S. (Matthijs) Berends
2019-01-27 13:33:43 +01:00
parent 3370a4091c
commit 18b75356a9
13 changed files with 457 additions and 437 deletions
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NEWS.md
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@ -48,13 +48,13 @@
#### Changed
* Added 65 antibiotics to the `antibiotics` data set, from the [Pharmaceuticals Community Register](http://ec.europa.eu/health/documents/community-register/html/atc.htm) of the European Commission
* Removed columns `atc_group1_nl` and `atc_group2_nl` from the `antibiotics` data set
* Function `atc_ddd` has been renamed `atc_online_ddd()`
* Function `atc_groups` has been renamed `atc_online_groups()`
* Functions `atc_ddd()` and `atc_groups()` have been renamed `atc_online_ddd()` and `atc_online_groups()`. The old function are deprecated and will be removed in a future version.
* Function `guess_mo()` is now deprecated in favour of `as.mo()` and will be removed in future versions
* Function `guess_atc()` is now deprecated in favour of `as.atc()` and will be removed in future versions
* Function `eucast_rules()`:
* Updated EUCAST Clinical breakpoints to [version 9.0 of 1 January 2019](http://www.eucast.org/clinical_breakpoints/)
* Fixed a critical bug where some rules that depend on previous applied rules would not be applied adequately
* Emphasised in manual that penicillin is meant as benzylpenicillin (ATC [J01CE01](https://www.whocc.no/atc_ddd_index/?code=J01CE01))
* Function `guess_mo()` is now deprecated in favour of `as.mo()` and will be removed in future versions
* Improvements for `as.mo()`:
* Fix for vector containing only empty values
* Finds better results when input is in other languages