P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-18 04:03:13 +02:00
Code Releases Activity

(v1.8.0.9001) as.mo improvement, fixes #52

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-02-26 21:58:23 +01:00
parent be792cc9eb
commit 18e8525d10
108 changed files with 568 additions and 399 deletions
Download Patch File Download Diff File Expand all files Collapse all files

12
docs/reference/eucast_rules.html
View File

@ -18,7 +18,7 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.8.0</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.8.0.9001</span>
</span>
</div>
@ -163,7 +163,8 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
<p>To improve the interpretation of the antibiogram before EUCAST rules are applied, some non-EUCAST rules can applied at default, see <em>Details</em>.</p>
</div>
<div id="ref-usage">Usage,<div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">eucast_rules</span><span class="op">(</span>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">eucast_rules</span><span class="op">(</span>
<span class="va">x</span>,
col_mo <span class="op">=</span> <span class="cn">NULL</span>,
info <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/interactive.html" class="external-link">interactive</a></span><span class="op">(</span><span class="op">)</span>,
@ -177,7 +178,8 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
<span class="va">...</span>
<span class="op">)</span>
<span class="fu">eucast_dosage</span><span class="op">(</span><span class="va">ab</span>, administration <span class="op">=</span> <span class="st">"iv"</span>, version_breakpoints <span class="op">=</span> <span class="fl">11</span><span class="op">)</span></code></pre></div></div>
<span class="fu">eucast_dosage</span><span class="op">(</span><span class="va">ab</span>, administration <span class="op">=</span> <span class="st">"iv"</span>, version_breakpoints <span class="op">=</span> <span class="fl">11</span><span class="op">)</span></code></pre></div>
</div>
<div id="source">
<h2>Source</h2>
@ -261,7 +263,7 @@ Leclercq et al. <strong>EUCAST expert rules in antimicrobial susceptibility test
<h2>Stable Lifecycle</h2>
<p><img src="figures/lifecycle_stable.svg" style="margin-bottom:5px"><br>
<p><img src="figures/lifecycle_stable.svg" style='margin-bottom:"5"'><br>
The <a href="lifecycle.html">lifecycle</a> of this function is <strong>stable</strong>. In a stable function, major changes are unlikely. This means that the unlying code will generally evolve by adding new arguments; removing arguments or changing the meaning of existing arguments will be avoided.</p>
<p>If the unlying code needs breaking changes, they will occur gradually. For example, an argument will be deprecated and first continue to work, but will emit an message informing you of the change. Next, typically after at least one newly released version on CRAN, the message will be transformed to an error.</p>
</div>
@ -336,7 +338,7 @@ The <a href="lifecycle.html">lifecycle</a> of this function is <strong>stable</s
</div>
<div class="pkgdown">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.0.</p>
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.2.</p>
</div>
</footer></div>