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(v3.0.0.9028) fix as.ab() warning

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dr. M.S. (Matthijs) Berends
2025-09-10 15:06:51 +02:00
parent 4d7c4ca52c
commit 1922fb5ff2
3 changed files with 3 additions and 3 deletions
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DESCRIPTION
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@@ -1,5 +1,5 @@
Package: AMR Package: AMR
Version: 3.0.0.9027 Version: 3.0.0.9028
Date: 2025-09-10 Date: 2025-09-10
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)

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NEWS.md
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@@ -1,4 +1,4 @@
# AMR 3.0.0.9027 # AMR 3.0.0.9028
This is a bugfix release following the release of v3.0.0 in June 2025. This is a bugfix release following the release of v3.0.0 in June 2025.

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R/ab.R
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@@ -202,7 +202,7 @@ as.ab <- function(x, flag_multiple_results = TRUE, language = get_AMR_locale(),
if (sum(already_known) < length(x)) { if (sum(already_known) < length(x)) {
progress <- progress_ticker(n = sum(!already_known), n_min = 25, print = info) # start if n >= 25 progress <- progress_ticker(n = sum(!already_known), n_min = 25, print = info) # start if n >= 25
on.exit(close(progress)) on.exit(close(progress))
if (any(x_new[!already_known] %in% unlist(AMR_env$AV_lookup$generalised_all, use.names = FALSE), na.rm = TRUE)) { if (any(x_new[!already_known & !is.na(x_new)] %in% unlist(AMR_env$AV_lookup$generalised_all, use.names = FALSE), na.rm = TRUE)) {
warning_("in `as.ab()`: some input seem to resemble antiviral drugs - use `as.av()` or e.g. `av_name()` for these, not `as.ab()` or e.g. `ab_name()`.") warning_("in `as.ab()`: some input seem to resemble antiviral drugs - use `as.av()` or e.g. `av_name()` for these, not `as.ab()` or e.g. `ab_name()`.")
} }
} }