P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-09-07 12:09:38 +02:00
Code Releases Activity

EUCAST update, as.mo bugfix for empty vlaues

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-01-08 16:23:45 +01:00
parent a0055c7efe
commit 193a2d2863
54 changed files with 1504 additions and 972 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
NEWS.md
View File

@@ -28,9 +28,13 @@
* New vignettes about how to conduct AMR analysis, predict antimicrobial resistance, use the *G*-test and more. These are also available (and even easier readable) on our website: https://msberends.gitlab.io/AMR.
#### Changed
* Function `guess_mo()` is now deprecated in favour of `as.mo()` and will be remover in future versions
* Fixed a critical bug in `eucast_rules()` where some rules that depend on previous applied rules would not be applied adequately
* Function `eucast_rules()`:
* Updated EUCAST Clinical breakpoints to [version 9.0 of 1 January 2019](http://www.eucast.org/clinical_breakpoints/)
* Fixed a critical bug where some rules that depend on previous applied rules would not be applied adequately
* Emphasised in manual that penicillin is meant as benzylpenicillin (ATC [J01CE01](https://www.whocc.no/atc_ddd_index/?code=J01CE01))
* Function `guess_mo()` is now deprecated in favour of `as.mo()` and will be removed in future versions
* Improvements for `as.mo()`:
* Fix for vector containing only empty values
* Finds better results when input is in other languages
* Better handling for subspecies
* Better handling for *Salmonellae*