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(v1.1.0.9012) lose dependencies

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2020-05-19 12:08:49 +02:00
parent 218fd08097
commit 19703eb5d3
40 changed files with 101 additions and 584 deletions
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6
tests/testthat/test-ab.R
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@ -34,8 +34,8 @@ test_that("as.ab works", {
"Romycin"))),
rep("ERY", 10))
expect_identical(class(as.ab("amox")), "ab")
expect_identical(class(pull(antibiotics, ab)), "ab")
expect_identical(class(as.ab("amox")), c("ab", "character"))
expect_identical(class(pull(antibiotics, ab)), c("ab", "character"))
expect_true(is.ab(as.ab("amox")))
expect_output(print(as.ab("amox")))
expect_output(print(data.frame(a = as.ab("amox"))))
@ -46,8 +46,6 @@ test_that("as.ab works", {
expect_output(print(as.ab("amox")))
expect_identical(class(pull(antibiotics, ab)), "ab")
expect_equal(as.character(as.ab("Phloxapen")),
"FLC")

4
tests/testthat/test-data.R
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@ -27,9 +27,9 @@ test_that("data sets are valid", {
# IDs should always be unique
expect_identical(nrow(microorganisms), length(unique(microorganisms$mo)))
expect_identical(class(microorganisms$mo), "mo")
expect_identical(class(microorganisms$mo), c("mo", "character"))
expect_identical(nrow(antibiotics), length(unique(antibiotics$ab)))
expect_identical(class(antibiotics$ab), "ab")
expect_identical(class(antibiotics$ab), c("ab", "character"))
# check cross table reference
expect_true(all(microorganisms.codes$mo %in% microorganisms$mo))

29
tests/testthat/test-extended.R
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@ -1,29 +0,0 @@
# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://gitlab.com/msberends/AMR #
# #
# LICENCE #
# (c) 2018-2020 Berends MS, Luz CF et al. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
# ==================================================================== #
context("extended.R")
test_that("extensions work", {
expect_identical(scale_type.mo(), "discrete")
expect_identical(scale_type.ab(), "discrete")
})