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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9020</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9021</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -210,42 +210,41 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.005 0.025 64 1 2 0.005 64 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 <=0.001 0.25 0.025 16 16 32 0.125 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 <=0.001 0.005 0.002 8 2 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.001 0.125 0.002 0.25 0.5 128 0.002 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 0.005 2 1 0.125 0.005 >=256 >=256 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 0.125 4 0.0625 0.002 32 0.025 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 9 26 16 29 29 48 9 13 22 33 6 22 8 37 44 45 49 21 37 10 42 41 33 44</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 16 49 48 27 18 45 13 7 40 27 50 41 29 45 31 23 18 25 46 40 20 34 20 34</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S S S R I S S R S S S I I S R S R R S I R S I I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I R I S I R R R R S R I R R S S S I I R I R R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 256 0.0625 0.025 16 0.5 0.125 128 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 2 1 0.005 8 256 4 0.5 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 256 0.0625 8 <=0.001 0.5 128 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.001 >=128 2 0.5 4 1 8 0.5 1 0.001 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 2 0.002 64 16 0.002 8 0.002 4 >=128 0.025 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] >=128</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 32 32 0.25 8 2 >=64 16 4 >=64 >=64 0.5 1 >=64 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 32 0.25 2 0.25 8 4 8 8 0.25 0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 2 1 1 4 1 32 4 4 8 2 16 4 16 8 16 4 2 16 1 16 8 2 1 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.25 2 1 0.0625 4 2 1 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 4 0.25 1 0.5 1 4 0.125 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 0.5 0.125 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=4 >=4 0.5 >=4 0.0625 2 0.0625 1 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 1 >=4 1 0.25 1 >=4 0.25 >=4 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 0.5 0.125 0.5 >=4 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 10 26 27 49 50 31 18 15 47 43 44 22 22 33 39 43 32 10 22 32 31 41 47 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 40 47 40 41 48 35 45 42 27 44 17 17 30 8 8 44 30 26 49 50 35 44 37 43</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 12 16 11 15 16 14 16 17 16 13 13 16 15 13 15 13 12 12 14 15 16 11 17 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 17 11 11 17 16 15 13 13 11 15 12 15 12 14 13 14 14 14 14 15 17 12 15 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 23 17 19 23 16 27 22 26 15 26 23 19 27 21 21 16 22 19 24 18 15 15 21 25 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 20 21 27 15 26 21 25 23 27 25 15 19 26 20 25 20 25 22 19 16 25 20 24 17 22</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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