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@ -58,8 +58,9 @@ mo_name("Enterobacter asburiae/cloacae")
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# now add a custom entry - it will be considered by as.mo() and
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# all mo_*() functions
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add_custom_microorganisms(
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data.frame(genus = "Enterobacter",
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species = "asburiae/cloacae"
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data.frame(
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genus = "Enterobacter",
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species = "asburiae/cloacae"
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)
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)
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@ -81,8 +82,10 @@ mo_info("Enterobacter asburiae/cloacae")
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# the function tries to be forgiving:
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add_custom_microorganisms(
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data.frame(GENUS = "BACTEROIDES / PARABACTEROIDES SLASHLINE",
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SPECIES = "SPECIES")
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data.frame(
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GENUS = "BACTEROIDES / PARABACTEROIDES SLASHLINE",
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SPECIES = "SPECIES"
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)
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)
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mo_name("BACTEROIDES / PARABACTEROIDES")
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mo_rank("BACTEROIDES / PARABACTEROIDES")
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@ -93,9 +96,11 @@ mo_family("Bacteroides/Parabacteroides")
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# for groups and complexes, set them as species or subspecies:
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add_custom_microorganisms(
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data.frame(genus = "Citrobacter",
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species = c("freundii", "braakii complex"),
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subspecies = c("complex", ""))
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data.frame(
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genus = "Citrobacter",
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species = c("freundii", "braakii complex"),
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subspecies = c("complex", "")
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)
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)
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mo_name(c("C. freundii complex", "C. braakii complex"))
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mo_species(c("C. freundii complex", "C. braakii complex"))
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