revert back to pre-antibiogram

R/aa_globals.R

@@ -94,9 +94,7 @@ TAXONOMY_VERSION <- list(
 )
 
 globalVariables(c(
-  ".mo",
   ".rowid",
-  ".syndromic_group",
   "ab",
   "ab_txt",
   "affect_ab_name",
@@ -107,9 +105,8 @@ globalVariables(c(
   "atc_group1",
   "atc_group2",
   "base_ab",
-  "ci_max",
   "ci_min",
-  "clinical_breakpoints",
+  "ci_max",
   "code",
   "cols",
   "count",
@@ -133,15 +130,14 @@ globalVariables(c(
   "language",
   "lookup",
   "method",
-  "mic ",
   "mic",
+  "mic ",
   "microorganism",
   "microorganisms",
   "microorganisms.codes",
   "mo",
   "name",
   "new",
-  "numerator",
   "observations",
   "old",
   "old_name",
@@ -153,15 +149,13 @@ globalVariables(c(
   "reference.rule_group",
   "reference.version",
   "rowid",
+  "sir",
+  "clinical_breakpoints",
   "rule_group",
   "rule_name",
-  "S",
   "se_max",
   "se_min",
-  "SI",
-  "sir",
   "species",
-  "syndromic_group",
   "total",
   "txt",
   "type",