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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -314,18 +314,18 @@ Unique: 2</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S I I R S R</span></span>
<span><span class="co"># 2 R S S R S I</span></span>
<span><span class="co"># 3 I I R R S R</span></span>
<span><span class="co"># 4 S I R I I I</span></span>
<span><span class="co"># 5 R R I I R I</span></span>
<span><span class="co"># 6 R R R I S S</span></span>
<span><span class="co"># 1 S I I R R S</span></span>
<span><span class="co"># 2 R I R I S R</span></span>
<span><span class="co"># 3 R S R S I S</span></span>
<span><span class="co"># 4 S I I S R I</span></span>
<span><span class="co"># 5 S S I I I R</span></span>
<span><span class="co"># 6 R I R R I I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -357,40 +357,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3261</td>
<td align="right">65.22%</td>
<td align="right">3261</td>
<td align="right">65.22%</td>
<td align="right">3186</td>
<td align="right">63.72%</td>
<td align="right">3186</td>
<td align="right">63.72%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">959</td>
<td align="right">19.18%</td>
<td align="right">4220</td>
<td align="right">84.40%</td>
<td align="right">1014</td>
<td align="right">20.28%</td>
<td align="right">4200</td>
<td align="right">84.00%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">452</td>
<td align="right">9.04%</td>
<td align="right">4672</td>
<td align="right">93.44%</td>
<td align="right">475</td>
<td align="right">9.50%</td>
<td align="right">4675</td>
<td align="right">93.50%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">228</td>
<td align="right">4.56%</td>
<td align="right">4900</td>
<td align="right">98.00%</td>
<td align="right">233</td>
<td align="right">4.66%</td>
<td align="right">4908</td>
<td align="right">98.16%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">100</td>
<td align="right">2.00%</td>
<td align="right">92</td>
<td align="right">1.84%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>