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(v1.5.0.9009) unit test fixes

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dr. M.S. (Matthijs) Berends
2021-01-22 10:55:07 +01:00
parent 1ba44776a1
commit 1a88caa119
19 changed files with 51 additions and 25 deletions
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2
docs/reference/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9008</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9009</span>
</span>
</div>

14
docs/reference/isolate_identifier.html
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@ -82,7 +82,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9008</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9009</span>
</span>
</div>
@ -262,6 +262,18 @@
<th>cols_ab</th>
<td><p>a character vector of column names of <code>x</code>, or (a combination with) an <a href='[ab_class()]'>antibiotic selector function</a>, such as <code><a href='antibiotic_class_selectors.html'>carbapenems()</a></code> and <code><a href='antibiotic_class_selectors.html'>aminoglycosides()</a></code></p></td>
</tr>
<tr>
<th>target</th>
<td><p><span style="R">R</span> object.</p></td>
</tr>
<tr>
<th>current</th>
<td><p>other <span style="R">R</span> object, to be compared with <code>target</code>.</p></td>
</tr>
<tr>
<th>ignore_empty_results</th>
<td><p>a logical to indicate whether empty results must be ignored, so that only values R, S and I will be compared</p></td>
</tr>
<tr>
<th>...</th>
<td><p>column name of an antibiotic, see section <em>Antibiotics</em> below</p></td>