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(v1.5.0.9009) unit test fixes

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-01-22 10:55:07 +01:00
parent 1ba44776a1
commit 1a88caa119
19 changed files with 51 additions and 25 deletions
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7
tests/testthat/test-data.R
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@ -63,7 +63,7 @@ test_that("data sets are valid", {
test_that("creation of data sets is valid", {
skip_on_cran()
df <- create_MO_lookup()
df <- AMR:::MO_lookup
expect_lt(nrow(df[which(df$prevalence == 1), ]), nrow(df[which(df$prevalence == 2), ]))
expect_lt(nrow(df[which(df$prevalence == 2), ]), nrow(df[which(df$prevalence == 3), ]))
expect_true(all(c("mo", "fullname",
@ -71,11 +71,10 @@ test_that("creation of data sets is valid", {
"rank", "ref", "species_id", "source", "prevalence", "snomed",
"kingdom_index", "fullname_lower", "g_species") %in% colnames(df)))
olddf <- create_MO.old_lookup()
expect_true(all(c("fullname", "fullname_new", "ref", "prevalence",
"fullname_lower", "g_species") %in% colnames(olddf)))
"fullname_lower", "g_species") %in% colnames(AMR:::MO.old_lookup)))
expect_s3_class(create_species_cons_cops("CoNS"), "mo")
expect_s3_class(AMR:::MO_CONS, "mo")
})