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(v1.7.1.9025) unit tests

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dr. M.S. (Matthijs) Berends
2021-08-18 23:19:38 +02:00
parent a44283f998
commit 1b62bab007
17 changed files with 191 additions and 302 deletions
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31
inst/tinytest/test-_deprecated.R
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@ -23,34 +23,3 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
expect_identical(suppressWarnings(p_symbol(c(0.001, 0.01, 0.05, 0.1, 1, NA, 3))),
c("***", "**", "*", ".", " ", NA, NA))
expect_warning(key_antibiotics(example_isolates))
expect_identical(suppressWarnings(key_antibiotics(example_isolates)),
key_antimicrobials(example_isolates, antifungal = NULL))
expect_warning(key_antibiotics_equal("S", "S"))
expect_identical(suppressWarnings(key_antibiotics_equal("S", "S")),
antimicrobials_equal("S", "S", type = "keyantimicrobials"))
expect_warning(filter_first_weighted_isolate(example_isolates))
expect_identical(suppressWarnings(filter_first_weighted_isolate(example_isolates)),
filter_first_isolate(example_isolates))
expect_warning(filter_ab_class(example_isolates, "mycobact"))
expect_warning(filter_aminoglycosides(example_isolates))
expect_warning(filter_betalactams(example_isolates))
expect_warning(filter_carbapenems(example_isolates))
expect_warning(filter_cephalosporins(example_isolates))
expect_warning(filter_1st_cephalosporins(example_isolates))
expect_warning(filter_2nd_cephalosporins(example_isolates))
expect_warning(filter_3rd_cephalosporins(example_isolates))
expect_warning(filter_4th_cephalosporins(example_isolates))
expect_warning(filter_5th_cephalosporins(example_isolates))
expect_warning(filter_fluoroquinolones(example_isolates))
expect_warning(filter_glycopeptides(example_isolates))
expect_warning(filter_macrolides(example_isolates))
expect_warning(filter_oxazolidinones(example_isolates))
expect_warning(filter_penicillins(example_isolates))
expect_warning(filter_tetracyclines(example_isolates))