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(v1.2.0.9037) survey on website

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dr. M.S. (Matthijs) Berends
2020-07-28 18:39:57 +02:00
parent ab2b359e6b
commit 1b65d76cfb
140 changed files with 1309 additions and 941 deletions
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6
data-raw/create_survey_page.R Normal file
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@ -0,0 +1,6 @@
license_text <- readLines("docs/LICENSE-text.html")
license_text <- paste(license_text, collapse = "|||")
license_text <- gsub("licen(s|c)e", "Survey", license_text, ignore.case = TRUE)
license_text <- gsub("<pre>.*</pre>", '<p>If no form is showing below, please <a href="https://forms.office.com/Pages/ResponsePage.aspx?id=-SJRM_TUZ02i_M1twg3ecDlnO1BBtdxGi-GnYu7DKfdUNTFLQ0xVSUlRVVlXTlVTNjZFMjdRUVpCSy4u" target="_blank">click here to open it</a>.</p><iframe width="100%" height= "500px" src= "https://forms.office.com/Pages/ResponsePage.aspx?id=-SJRM_TUZ02i_M1twg3ecDlnO1BBtdxGi-GnYu7DKfdUNTFLQ0xVSUlRVVlXTlVTNjZFMjdRUVpCSy4u&embed=true" frameborder= "0" marginwidth= "0" marginheight= "0" style= "border: none; max-width:100%; max-height:100vh" allowfullscreen webkitallowfullscreen mozallowfullscreen msallowfullscreen> </iframe>', license_text)
writeLines(unlist(strsplit(license_text, "|||", fixed = TRUE)), "docs/survey.html")

2
data-raw/eucast_rules.tsv
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@ -177,7 +177,7 @@ genus_species is Clostridium innocuum VAN R Table 04: Intrinsic resistance in
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G) PEN S aminopenicillins, cephalosporins_except_CAZ, carbapenems S Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus AMP R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus AMX R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
family is Enterobacteriaceae TIC, PIP R, S PIP R Table 09: Interpretive rules for B-lactam agents and Gram-negative rods Expert Rules
order is Enterobacterales TIC, PIP R, S PIP R Table 09: Interpretive rules for B-lactam agents and Gram-negative rods (at the time: Enterobacteriaceae) Expert Rules
genus like .* ERY S AZM, CLR S Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus like .* ERY I AZM, CLR I Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus like .* ERY R AZM, CLR R Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules

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