diff --git a/DESCRIPTION b/DESCRIPTION index 4bda1fca..0db0e65c 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 0.9.0.9016 +Version: 0.9.0.9017 Date: 2020-01-27 Title: Antimicrobial Resistance Analysis Authors@R: c( diff --git a/NEWS.md b/NEWS.md index 1f5ea065..df4c45b7 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 0.9.0.9016 +# AMR 0.9.0.9017 ## Last updated: 27-Jan-2020 ### New diff --git a/R/data.R b/R/data.R index 81b11156..d1554faa 100755 --- a/R/data.R +++ b/R/data.R @@ -196,7 +196,6 @@ catalogue_of_life <- list( #' - `disk_dose`\cr Dose of the used disk diffusion method #' - `breakpoint_S`\cr Lowest MIC value or highest number of millimeters that leads to "S" #' - `breakpoint_R`\cr Highest MIC value or lowest number of millimeters that leads to "R" -#' @details The repository of this `AMR` package contains a file comprising this exact data set: [https://gitlab.com/msberends/AMR/blob/master/data-raw/rsi_translation.txt]. This file **allows for machine reading EUCAST and CLSI guidelines**, which is almost impossible with the Excel and PDF files distributed by EUCAST and CLSI. This file is updated automatically. - +#' @details The repository of this `AMR` package contains a file comprising this exact data set: . This file **allows for machine reading EUCAST and CLSI guidelines**, which is almost impossible with the Excel and PDF files distributed by EUCAST and CLSI. This file is updated automatically. #' @inheritSection AMR Read more on our website! "rsi_translation" diff --git a/docs/404.html b/docs/404.html index 9c8526bc..a7d64199 100644 --- a/docs/404.html +++ b/docs/404.html @@ -84,7 +84,7 @@ AMR (for R) - 0.9.0.9016 + 0.9.0.9017 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index b3489e98..dfa51f6b 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -84,7 +84,7 @@ AMR (for R) - 0.9.0.9016 + 0.9.0.9017 diff --git a/docs/articles/index.html b/docs/articles/index.html index a4565f62..ee082563 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -84,7 +84,7 @@ AMR (for R) - 0.9.0.9016 + 0.9.0.9017 diff --git a/docs/authors.html b/docs/authors.html index cdf1499a..d70eea97 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -84,7 +84,7 @@ AMR (for R) - 0.9.0.9016 + 0.9.0.9017 diff --git a/docs/index.html b/docs/index.html index d0569e00..9ce218eb 100644 --- a/docs/index.html +++ b/docs/index.html @@ -45,7 +45,7 @@ AMR (for R) - 0.9.0.9016 + 0.9.0.9017 diff --git a/docs/news/index.html b/docs/news/index.html index fe513de2..5ea8af87 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -84,7 +84,7 @@ AMR (for R) - 0.9.0.9016 + 0.9.0.9017 @@ -231,9 +231,9 @@ -
+

-AMR 0.9.0.9016 Unreleased +AMR 0.9.0.9017 Unreleased

@@ -1459,7 +1459,7 @@ Using as.mo(..., allow_uncertain = 3)

Contents

    -
  • 0.9.0.9016
    • +
  • 0.9.0.9017
  • 0.9.0
  • 0.8.0
  • 0.7.1
    • diff --git a/docs/reference/index.html b/docs/reference/index.html index 8b06c709..fd7eeaff 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -84,7 +84,7 @@ AMR (for R) - 0.9.0.9016 + 0.9.0.9017

diff --git a/docs/reference/rsi_translation.html b/docs/reference/rsi_translation.html index 63bdef98..2ab917b0 100644 --- a/docs/reference/rsi_translation.html +++ b/docs/reference/rsi_translation.html @@ -85,7 +85,7 @@ AMR (for R) - 0.9.0.9016 + 0.9.0.9017
@@ -255,7 +255,7 @@

Details

-

The repository of this AMR package contains a file comprising this exact data set: https://gitlab.com/msberends/AMR/blob/master/data-raw/rsi_translation.txt. This file allows for machine reading EUCAST and CLSI guidelines, which is almost impossible with the Excel and PDF files distributed by EUCAST and CLSI. This file is updated automatically.

+

The repository of this AMR package contains a file comprising this exact data set: https://gitlab.com/msberends/AMR/blob/master/data-raw/rsi_translation.txt. This file allows for machine reading EUCAST and CLSI guidelines, which is almost impossible with the Excel and PDF files distributed by EUCAST and CLSI. This file is updated automatically.

Read more on our website!

diff --git a/man/rsi_translation.Rd b/man/rsi_translation.Rd index 4e8fbe4a..ac35d79b 100644 --- a/man/rsi_translation.Rd +++ b/man/rsi_translation.Rd @@ -23,7 +23,7 @@ rsi_translation Data set to interpret MIC and disk diffusion to R/SI values. Included guidelines are CLSI (2011-2019) and EUCAST (2011-2019). Use \code{\link[=as.rsi]{as.rsi()}} to transform MICs or disks measurements to R/SI values. } \details{ -The repository of this \code{AMR} package contains a file comprising this exact data set: \link{https://gitlab.com/msberends/AMR/blob/master/data-raw/rsi_translation.txt}. This file \strong{allows for machine reading EUCAST and CLSI guidelines}, which is almost impossible with the Excel and PDF files distributed by EUCAST and CLSI. This file is updated automatically. +The repository of this \code{AMR} package contains a file comprising this exact data set: \url{https://gitlab.com/msberends/AMR/blob/master/data-raw/rsi_translation.txt}. This file \strong{allows for machine reading EUCAST and CLSI guidelines}, which is almost impossible with the Excel and PDF files distributed by EUCAST and CLSI. This file is updated automatically. } \section{Read more on our website!}{