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(v1.8.1.9011) update prevalence of some genera

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dr. M.S. (Matthijs) Berends
2022-06-03 12:43:25 +02:00
parent 70a07bad39
commit 1b84564d36
35 changed files with 278 additions and 429 deletions
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6
man/as.mo.Rd
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@ -61,7 +61,9 @@ Use this function to determine a valid microorganism code (\code{\link{mo}}). De
\details{
\subsection{General Info}{
A microorganism (MO) code from this package (class: \code{\link{mo}}) is human readable and typically looks like these examples:\preformatted{ Code Full name
A microorganism (MO) code from this package (class: \code{\link{mo}}) is human readable and typically looks like these examples:
\if{html}{\out{<div class="sourceCode">}}\preformatted{ Code Full name
--------------- --------------------------------------
B_KLBSL Klebsiella
B_KLBSL_PNMN Klebsiella pneumoniae
@ -73,7 +75,7 @@ A microorganism (MO) code from this package (class: \code{\link{mo}}) is human r
| \\----> genus, a 5-7 letter acronym
\\----> taxonomic kingdom: A (Archaea), AN (Animalia), B (Bacteria),
C (Chromista), F (Fungi), P (Protozoa)
}
}\if{html}{\out{</div>}}
Values that cannot be coerced will be considered 'unknown' and will get the MO code \code{UNKNOWN}.