Data sets for download / own use
-22 September 2024
+24 September 2024
Source:vignettes/datasets.Rmd
datasets.Rmd
antibiogram(example_isolates,
antibiotics = c(aminoglycosides(), carbapenems()))
From 1c32c669a04909946cb3b24185f11c996351d6db Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Tue, 24 Sep 2024 20:49:01 +0000 Subject: [PATCH] Built site for AMR@2.1.1.9080: a558f4c --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/AMR.html | 10 +- articles/EUCAST.html | 2 +- articles/MDR.html | 2 +- articles/PCA.html | 2 +- articles/WHONET.html | 2 +- articles/datasets.html | 4 +- articles/index.html | 2 +- articles/other_pkg.html | 2 +- articles/resistance_predict.html | 2 +- articles/welcome_to_AMR.html | 2 +- authors.html | 2 +- index.html | 238 ++++++++++++---------- news/index.html | 27 +-- pkgdown.yml | 2 +- reference/AMR-options.html | 2 +- reference/AMR.html | 2 +- reference/WHOCC.html | 2 +- reference/WHONET.html | 2 +- reference/ab_from_text.html | 2 +- reference/ab_property.html | 4 +- reference/add_custom_antimicrobials.html | 6 +- reference/add_custom_microorganisms.html | 6 +- reference/age.html | 22 +- reference/age_groups.html | 2 +- reference/antibiogram.html | 6 +- reference/antibiotic_class_selectors.html | 2 +- reference/antibiotics.html | 2 +- reference/as.ab.html | 2 +- reference/as.av.html | 2 +- reference/as.disk.html | 2 +- reference/as.mic.html | 2 +- reference/as.mo.html | 10 +- reference/as.sir.html | 78 +++---- reference/atc_online.html | 2 +- reference/av_from_text.html | 2 +- reference/av_property.html | 4 +- reference/availability.html | 2 +- reference/bug_drug_combinations.html | 4 +- reference/clinical_breakpoints.html | 27 ++- reference/count.html | 4 +- reference/custom_eucast_rules.html | 2 +- reference/dosage.html | 2 +- reference/eucast_rules.html | 6 +- reference/example_isolates.html | 2 +- reference/example_isolates_unclean.html | 2 +- reference/export_ncbi_biosample.html | 2 +- reference/first_isolate.html | 2 +- reference/g.test.html | 2 +- reference/get_episode.html | 2 +- reference/ggplot_pca.html | 2 +- reference/ggplot_sir.html | 4 +- reference/guess_ab_col.html | 2 +- reference/index.html | 2 +- reference/intrinsic_resistant.html | 2 +- reference/italicise_taxonomy.html | 2 +- reference/join.html | 2 +- reference/key_antimicrobials.html | 2 +- reference/kurtosis.html | 2 +- reference/like.html | 2 +- reference/mdro.html | 2 +- reference/mean_amr_distance.html | 2 +- reference/microorganisms.codes.html | 2 +- reference/microorganisms.groups.html | 2 +- reference/microorganisms.html | 2 +- reference/mo_matching_score.html | 2 +- reference/mo_property.html | 4 +- reference/mo_source.html | 4 +- reference/pca.html | 2 +- reference/plot-10.png | Bin 26103 -> 25812 bytes reference/plot-11.png | Bin 38164 -> 31245 bytes reference/plot-12.png | Bin 55829 -> 38164 bytes reference/plot-13.png | Bin 25676 -> 55829 bytes reference/plot-14.png | Bin 0 -> 25676 bytes reference/plot-7.png | Bin 25105 -> 24961 bytes reference/plot-8.png | Bin 26027 -> 26216 bytes reference/plot-9.png | Bin 29649 -> 29217 bytes reference/plot.html | 28 ++- reference/proportion.html | 4 +- reference/random.html | 2 +- reference/resistance_predict.html | 2 +- reference/skewness.html | 2 +- reference/translate.html | 8 +- search.json | 2 +- 85 files changed, 321 insertions(+), 297 deletions(-) create mode 100644 reference/plot-14.png diff --git a/404.html b/404.html index d0dd8829..776970d8 100644 --- a/404.html +++ b/404.html @@ -30,7 +30,7 @@ AMR (for R) - 2.1.1.9078 + 2.1.1.9080
+generated on 24 September 2024.vignettes/datasets.Rmd
datasets.Rmd
antibiogram(example_isolates,
antibiotics = c(aminoglycosides(), carbapenems()))