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@ -31,7 +31,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9235</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9236</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -91,19 +91,18 @@
<p>Note: to keep the package size as small as possible, we only include
this vignette on CRAN. You can read more vignettes on our website about
how to conduct AMR data analysis, determine MDROs, find explanation of
EUCAST and CLSI breakpoints, and much more: <a href="https://www.amr-for-r.org/articles/" class="external-link uri">https://www.amr-for-r.org/articles/</a>.</p>
EUCAST and CLSI breakpoints, and much more: <a href="https://amr-for-r.org/articles/" class="uri">https://amr-for-r.org/articles/</a>.</p>
<hr>
<p>The <code>AMR</code> package is a <a href="https://www.amr-for-r.org/" class="external-link">free and open-source</a> R package
with <a href="https://en.wikipedia.org/wiki/Dependency_hell" class="external-link">zero
<p>The <code>AMR</code> package is a <a href="https://amr-for-r.org/">free and open-source</a> R package with <a href="https://en.wikipedia.org/wiki/Dependency_hell" class="external-link">zero
dependencies</a> to simplify the analysis and prediction of
Antimicrobial Resistance (AMR) and to work with microbial and
antimicrobial data and properties, by using evidence-based methods.
<strong>Our aim is to provide a standard</strong> for clean and
reproducible AMR data analysis, that can therefore empower
epidemiological analyses to continuously enable surveillance and
treatment evaluation in any setting. <a href="https://www.amr-for-r.org/authors.html" class="external-link">Many different
researchers</a> from around the globe are continually helping us to make
this a successful and durable project!</p>
treatment evaluation in any setting. <a href="https://amr-for-r.org/authors.html">Many different researchers</a>
from around the globe are continually helping us to make this a
successful and durable project!</p>
<p>This work was published in the Journal of Statistical Software
(Volume 104(3); <a href="https://doi.org/10.18637/jss.v104.i03" class="external-link">DOI
10.18637/jss.v104.i03</a>) and formed the basis of two PhD theses (<a href="https://doi.org/10.33612/diss.177417131" class="external-link">DOI
@ -165,25 +164,25 @@ interpretation, EUCAST rules, etc.) in this <code>AMR</code> package are
publicly and freely available. We continually export our data sets to
formats for use in R, SPSS, Stata and Excel. We also supply flat files
that are machine-readable and suitable for input in any software
program, such as laboratory information systems. Please find <a href="https://www.amr-for-r.org/articles/datasets.html" class="external-link">all download
links on our website</a>, which is automatically updated with every code
program, such as laboratory information systems. Please find <a href="https://amr-for-r.org/articles/datasets.html">all download links
on our website</a>, which is automatically updated with every code
change.</p>
<p>This R package was created for both routine data analysis and
academic research at the Faculty of Medical Sciences of the <a href="https://www.rug.nl" class="external-link">University of Groningen</a>, in collaboration
with non-profit organisations <a href="https://www.certe.nl" class="external-link">Certe
Medical Diagnostics and Advice Foundation</a> and <a href="https://www.umcg.nl" class="external-link">University Medical Center Groningen</a>, and
is being <a href="https://www.amr-for-r.org/news/" class="external-link">actively and durably
is being <a href="https://amr-for-r.org/news/">actively and durably
maintained</a> by two public healthcare organisations in the
Netherlands.</p>
<hr>
<p><small> This AMR package for R is free, open-source software and
licensed under the <a href="https://www.amr-for-r.org/LICENSE-text.html" class="external-link">GNU General Public
License v2.0 (GPL-2)</a>. These requirements are consequently legally
binding: modifications must be released under the same license when
distributing the package, changes made to the code must be documented,
source code must be made available when the package is distributed, and
a copy of the license and copyright notice must be included with the
package. </small></p>
licensed under the <a href="https://amr-for-r.org/LICENSE-text.html">GNU
General Public License v2.0 (GPL-2)</a>. These requirements are
consequently legally binding: modifications must be released under the
same license when distributing the package, changes made to the code
must be documented, source code must be made available when the package
is distributed, and a copy of the license and copyright notice must be
included with the package. </small></p>
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