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(v1.8.1.9003) set_mo_source() fix

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dr. M.S. (Matthijs) Berends
2022-05-09 20:36:44 +02:00
parent 152db9d1b5
commit 1c891cc90c
15 changed files with 86 additions and 76 deletions
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NEWS.md
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# `AMR` 1.8.1.9002
# `AMR` 1.8.1.9003
## <small>Last updated: 9 May 2022</small>
### Changed
* Removed `as.integer()` for MIC values, since MIC are not integer values and running `table()` on MIC values will consequently fail for not being able to retrieve the level position (as that's how normally `as.integer()` on `factor`s work)
* Removed `as.integer()` for MIC values, since MIC are not integer values and running `table()` on MIC values consequently failed for not being able to retrieve the level position (as that's how normally `as.integer()` on `factor`s work)
* `droplevels()` on MIC will now return a common `factor` at default and will lose the `<mic>` class. Use `droplevels(..., as.mic = TRUE)` to keep the `<mic>` class.
* Small fix for using `ab_from_text()`
* Fixes for reading in text files using `set_mo_source()`, which now also allows the source file to contain valid taxonomic names instead of only valid microorganism ID of this package
# `AMR` 1.8.1