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(v0.7.1.9035) cephalosporins and unit tests

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dr. M.S. (Matthijs) Berends
2019-08-11 19:07:26 +02:00
parent 3f5828e74a
commit 1d423cca89
38 changed files with 382 additions and 361 deletions
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2
R/eucast_rules.R
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@ -669,7 +669,7 @@ eucast_rules <- function(x,
suppressWarnings(
all_staph <- AMR::microorganisms %>%
filter(genus == "Staphylococcus") %>%
mutate(CNS_CPS = mo_fullname(mo, Becker = "all"))
mutate(CNS_CPS = mo_name(mo, Becker = "all"))
)
if (eucast_rules_df[i, 3] %like% "coagulase-") {
eucast_rules_df[i, 3] <- paste0("^(",