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(v1.7.1.9033) dplyr grouping fix on windows?

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dr. M.S. (Matthijs) Berends
2021-08-30 15:01:32 +02:00
parent 6ca6a3f6df
commit 1daa117e9f
17 changed files with 44 additions and 26 deletions
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man/first_isolate.Rd
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@ -90,7 +90,7 @@ filter_first_isolate(
A \code{\link{logical}} vector
}
\description{
Determine first isolates of all microorganisms of every patient per episode and (if needed) per specimen type. These functions support all four methods as summarised by Hindler \emph{et al.} in 2007 (\doi{10.1086/511864}). To determine patient episodes not necessarily based on microorganisms, use \code{\link[=is_new_episode]{is_new_episode()}} that also supports \link[dplyr:group_by]{grouping with the \code{dplyr} package} .
Determine first isolates of all microorganisms of every patient per episode and (if needed) per specimen type. These functions support all four methods as summarised by Hindler \emph{et al.} in 2007 (\doi{10.1086/511864}). To determine patient episodes not necessarily based on microorganisms, use \code{\link[=is_new_episode]{is_new_episode()}} that also supports grouping with the \code{dplyr} package.
}
\details{
To conduct epidemiological analyses on antimicrobial resistance data, only so-called first isolates should be included to prevent overestimation and underestimation of antimicrobial resistance. Different methods can be used to do so, see below.