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AMR
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good start-up practice

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dr. M.S. (Matthijs) Berends 2022-12-29 16:23:57 +01:00
parent 61c0bdb7af
commit 1db74e86cd
4 changed files with 7 additions and 5 deletions
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2
.github/workflows/check-old.yaml vendored
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@ -94,7 +94,7 @@ jobs:
uses: actions/cache@v2 uses: actions/cache@v2
with: with:
path: ${{ env.R_LIBS_USER }} path: ${{ env.R_LIBS_USER }}
key: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-v4 key: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-v5
- name: Install R dependencies - name: Install R dependencies
if: always() if: always()

4
DESCRIPTION
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@ -1,6 +1,6 @@
Package: AMR Package: AMR
Version: 1.8.2.9073 Version: 1.8.2.9074
Date: 2022-12-28 Date: 2022-12-29
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by data analysis and to work with microbial and antimicrobial properties by

2
NEWS.md
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@ -1,4 +1,4 @@
# AMR 1.8.2.9073 # AMR 1.8.2.9074
*(this beta version will eventually become v2.0! We're happy to reach a new major milestone soon!)* *(this beta version will eventually become v2.0! We're happy to reach a new major milestone soon!)*

4
R/zzz.R
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@ -184,7 +184,9 @@ if (utf8_supported && !is_latex) {
AMR_env$AB_lookup <- create_AB_lookup() AMR_env$AB_lookup <- create_AB_lookup()
AMR_env$AV_lookup <- create_AV_lookup() AMR_env$AV_lookup <- create_AV_lookup()
AMR_env$MO_lookup <- create_MO_lookup() AMR_env$MO_lookup <- create_MO_lookup()
}
.onAttach <- function(lib, pkg) {
# if custom ab option is available, load it # if custom ab option is available, load it
if (!is.null(getOption("AMR_custom_ab")) && file.exists(getOption("AMR_custom_ab", default = ""))) { if (!is.null(getOption("AMR_custom_ab")) && file.exists(getOption("AMR_custom_ab", default = ""))) {
packageStartupMessage("Adding custom antimicrobials from '", getOption("AMR_custom_ab"), "'...", appendLF = FALSE) packageStartupMessage("Adding custom antimicrobials from '", getOption("AMR_custom_ab"), "'...", appendLF = FALSE)